Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq108602 154 3e-32 seq19544 134 3e-26 seq97248 123 6e-23 seq14831 104 5e-17 seq94139 87.8 4e-12 seq87644 86.0 1e-11 >seq108602 Length=371 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | || ||||| || |||||||| ||||||||||| | || || || Sbjct 129 AAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCT 188 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| | || || || || |||||||| | |||||||| || |||| ||| || Sbjct 189 ACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTC 248 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || || ||||| || || || |||||||||||||| |||||| || | || Sbjct 249 TTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAGGT 308 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || ||||| || |||||||| ||||| | ||||||| Sbjct 309 GATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq19544 Length=280 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | |||||||||||||| || ||||| || ||||| | | ||| || Sbjct 58 AAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCT 117 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| | ||||| ||||| ||||| | | |||||| || || || | ||||| Sbjct 118 TCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTC 177 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || ||||| || || || || || || || || ||| || || || || Sbjct 178 CTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGT 237 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| || | ||||||||||| | |||||| || Sbjct 238 AATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATT 279 >seq97248 Length=461 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||||||||||||||||| || ||||| ||||| | | || ||| Sbjct 400 AGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTT 341 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | ||||| || |||||||| | | ||||| || || || | ||||| Sbjct 340 CCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCT 281 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| || || || || || ||||| || | || Sbjct 280 TTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTA 221 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | ||||||||| || | ||||| || Sbjct 220 ATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATT 180 >seq14831 Length=294 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||||||||| | ||| |||||||||||||| || || || || | ||| ||||| Sbjct 152 TCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGCTAAGGTTCTTCC 93 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || || ||||| ||||| || | |||||||| ||||| | ||||| || Sbjct 92 ATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGGGATGCCTTCTTT 33 Query 211019 GTCCTGGATCTT 211030 ||| || || || Sbjct 32 GTCTTGAATTTT 21 >seq94139 Length=510 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 210913 GAAGA--GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||| || ||||||||| || || ||||| ||| || ||||||||||||| || Sbjct 139 GAAGATGGTAGACTCTTTTCTAATATTGTAATCTGCAGCTGTTCTTCCATCTTCCAATTG 198 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || | || | | | ||| |||| || | |||||||| ||||| || || Sbjct 199 CTTTCCACCAAAAACTAATCTTTGGCTATCAGCTGGGATACCTTCCTTTTCCTGAATTTT 258 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| | ||| || || | || | |||||| |||| ||||| || || || || Sbjct 259 GGCTTTGATGTTATCAATAGATTCGTTGTGTTCAACATCGACTGTGATAGTTTTACCTGT 318 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| |||||||| || |||||||| Sbjct 319 TAGAGTTTTTACAAATACTTGCATTTT 345 >seq87644 Length=678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| || ||||| || || ||||| || || || || || | | ||| ||||| Sbjct 365 TCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGTTCTTCC 306 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || || ||||| | | |||||| || ||||||| |||||| || Sbjct 305 ATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTT 246 Query 211019 GTCCTGGATCTT 211030 || || || || Sbjct 245 ATCTTGAATTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157530914336480