Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq97248 91.5 1e-13 seq19544 91.5 1e-13 >seq97248 Length=461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| || || | || || || || || || | || ||||| Sbjct 180 AATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAA 239 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||| || | || || || | || ||||||||||| | || ||||| Sbjct 240 TCAGATACTATTGACAACGTCAAGACTAAGA-TTCAAGACAAAGAAGGCATCCCACCAGA 298 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | || || || || || || ||| | ||||| | | | || ||| ||||| Sbjct 299 TCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTA 358 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || ||||||||||| | ||||| || | || | |||||||| Sbjct 359 CAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGA 410 >seq19544 Length=280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||| | || ||||| || || || || || || || Sbjct 279 AATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAA 220 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||| ||| | || || || | || || || |||||| | || ||||| Sbjct 219 TCCGATACTATTGATAATGTAAAGACTAAGA-TTCAAGATAAGGAAGGTATCCCACCAGA 161 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | || || ||||| || || ||| | ||||| | | | || ||| ||||| Sbjct 160 TCAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTA 101 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || |||||||| | ||||| || | || | |||||||| Sbjct 100 CAATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGGA 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337559949209216