Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq108602 145 2e-29 seq97248 141 2e-28 seq19544 134 3e-26 seq14831 113 1e-19 seq60228 109 1e-18 seq21391 100 7e-16 seq14122 95.1 3e-14 seq92352 86.0 1e-11 seq8808 84.2 5e-11 >seq108602 Length=371 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| ||||| | |||||||| ||||||||||| | || ||||| | | |||||| Sbjct 129 AAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCT 188 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||||| || || ||||| |||||||||| |||||||| || ||||| || || Sbjct 189 ACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTC 248 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||| ||||| ||| ||| ||||||||||| || ||| || ||||| || Sbjct 249 TTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAGGT 308 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || || || | ||| || | || | |||||| Sbjct 309 GATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq97248 Length=461 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | || |||||||| ||||| || | |||||||| | || ||||| Sbjct 400 AGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTT 341 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||||| ||||||||||| | || ||||| || || || || ||||| Sbjct 340 CCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCT 281 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| ||| || || || || ||||| || || ||||| || Sbjct 280 TTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTA 221 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || || ||||| |||| ||| | |||||| || Sbjct 220 ATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATT 180 >seq19544 Length=280 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| || || | || |||||||| || || |||| ||||||||| | || ||||| Sbjct 58 AAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCT 117 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||| ||||| || || ||||| | || |||||| || || || |||||||| Sbjct 118 TCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTC 177 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| ||||| ||||| ||| ||| || || || || || ||| ||||| | || Sbjct 178 CTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGT 237 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || ||||| || |||| || | ||||| || Sbjct 238 AATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATT 279 >seq14831 Length=294 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||||||||||| ||| || |||||||||| |||||| || || || ||||| || Sbjct 152 TCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGCTAAGGTTCTTCC 93 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || || || || ||||| |||| |||||||| || || || ||||| || Sbjct 92 ATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGGGATGCCTTCTTT 33 Query 225618 GTCTTGGATCTT 225629 |||||| || || Sbjct 32 GTCTTGAATTTT 21 >seq60228 Length=5126 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || || || ||||| || ||||| |||||||||||||| Sbjct 1403 GAAGATTTGACCATCAGTAATCGAAATTACGTTTGTTGGAATATATGCAGAAACATCACC 1462 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||||||||||| | || || | || |||| ||| |||||||| Sbjct 1463 TGCTTGTGTTTCAATAATTGGAAGCGCAGTTAATGAACCACCACC 1507 >seq21391 Length=271 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 |||||| |||||||| |||||||| || || || || |||||||| || ||||| ||||| Sbjct 206 GAATATCTGACCATCTGTAATAGAAATTACGTTGGTTGGGATATACGCTGAAACGTCACC 147 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | || || | |||||||| |||||||| || Sbjct 146 CGCTTGTGTTTCAATAATTGGAAGGGCTGTTAAAGATCCACCTCC 102 >seq14122 Length=298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||| || ||||| || || || || ||||||||||| |||||||| ||||| Sbjct 2 GAAGATCTGACCGTCCGTAATGGAAATTACGTTGGTAGGGATATATGCAGAAACGTCACC 61 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||||| || || | || ||| ||||| |||| ||| || ||||| Sbjct 62 TGCTTGAGTCTCAATAATAGGCAAGGCAGTTAATGAACCTCCACC 106 >seq92352 Length=561 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCA 6824 ||||||| ||||||||||||||||| ||||| | |||| |||| || ||| | |||| Sbjct 216 TTGAGAGGATGATCAGCCACATTGGAACTGAGACACGGTCCAAA-CTCCTACGGGAGGCA 158 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 ||||||| ||||||| ||||||||| | || | ||||| || Sbjct 157 GCAGTGGGGAATATTGGACAATGGGGGCAACCCTGATCCAG 117 >seq8808 Length=320 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 372637 AGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATA 372696 || |||| |||||||||||||||||||| ||| ||| || |||| |||| |||| ||||| Sbjct 85 AGGGGGTGGCGACTGTTTACTAAAAACATAGGGCTCTGCGAAGTCGTAAGACGACGTATA 26 Query 372697 GGGTCTGAC 372705 ||||||||| Sbjct 25 GGGTCTGAC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190863433191488