Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq59922 199 3e-46 seq75063 150 2e-31 >seq59922 Length=6033 Score = 199 bits (220), Expect = 3e-46 Identities = 602/913 (66%), Gaps = 30/913 (3%) Strand=Plus/Minus Query 4246 AAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTA 4305 |||| ||| |||||||||||| |||| |||||| ||||| || ||||| |||| | Sbjct 1158 AAACTCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAA 1099 Query 4306 ACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACA-CTTT 4364 ||||| ||||||| |||||||| || || || |||||| | |||||| | | Sbjct 1098 TTGAAATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTA 1039 Query 4365 AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 | | |||| |||| ||||| ||||| || || || || ||| | || | ||| Sbjct 1038 ATTCCAACAAT-AATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTC 980 Query 4425 ATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 ||||| ||||| | || || || || | | ||| |||| || || || || Sbjct 979 ATTCCGATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCG 920 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA---AC 4541 || ||| || | | | | | || || | |||||| || | || | Sbjct 919 TCAAGGATAATTTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGTAT 860 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 |||||||| || |||||||| ||||| ||||||||||| || | |||||||| || Sbjct 859 AATAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAA 800 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCA--AAATATAGCGGCAAATGACCCAG 4659 | | || ||||| | ||||| || || | ||| |||| | | | || || || | Sbjct 799 GAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAG--AAAGAACCTG 742 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT 4719 | ||||| || ||||| || || ||||| || || | || | || || | || Sbjct 741 AGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATC---CT- 686 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 || | |||||| || ||||| | |||||| |||||| || ||||||| | Sbjct 685 --TCATCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAA 628 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 |||| ||||| || | ||| || | ||||| ||| ||||| ||||||| || Sbjct 627 TAGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCG 568 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 |||| ||||||| || || ||||| | || | || || ||||| || || | || | Sbjct 567 AATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCT 508 Query 4900 CTGT-TACTTGAACTTCGTTACAA-AATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 | || ||| |||||||| | |||| || | ||| |||||||||| ||||| || || || Sbjct 507 CAGTATAC-TGAACTTC-TGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATC 450 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT- 5016 || || ||||| ||||| ||||| | ||| | |||| | | || || | Sbjct 449 TGATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTT 390 Query 5017 --TTTTCCAGTGGGGCAAAT---CTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAACG 5070 | | ||| | || | ||| | | ||||| ||||| | ||||| |||| Sbjct 389 CGTATCCCAATCAATTAAGTCGGCTTGA---AGATCAATCTCTTCGGCTGTCCAGAAACT 333 Query 5071 ACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAA 5130 | ||||| || |||||||| | || |||||| ||| | ||||| |||| || |||| Sbjct 332 A-GCTTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAA 274 Query 5131 ATCTGTTGTCGTT 5143 ||||||||| ||| Sbjct 273 ATCTGTTGTTGTT 261 >seq75063 Length=1318 Score = 150 bits (166), Expect = 2e-31 Identities = 432/661 (65%), Gaps = 5/661 (1%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || || |||| ||||||||||||||||||| |||| | ||||| | Sbjct 113 TTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTGAAGTGAAATCAT 172 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATG-TTTTTCACACTTTAGAGCTACAA 4374 ||||| | || || |||||| ||| ||| | || ||| || | |||| | | Sbjct 173 GTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTGGTACTC-CAAGAGTAAAGA 231 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | | || ||||| ||||| || ||||| || | ||| |||| || || || ||||| | Sbjct 232 GAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTATTCATACCAATAA 291 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | || || | | | | | ||| || | || || | ||| ||||| || | | Sbjct 292 GTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACTGCTTCAGTCAAAA 351 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | || | ||| | || || ||| ||||| || | | | | |||| ||||| |||| Sbjct 352 TTTCATAAATTCTTTCATTTGATACCTTATTAACCATATGTTTATACAACAAACAAGCAA 411 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | ||| ||| || || || ||||| |||| || ||||| || | || |||| Sbjct 412 AGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCA 471 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | | ||||||||| | ||| || || ||| ||| |||||||| ||||| || |||| Sbjct 472 TAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTT 531 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 |||| |||||||| | |||| | || || | | || | |||||||||| Sbjct 532 CTACACAAGCAAACGCAATCAATCTTTCAGCAAATGA---GTCATTCTTATTAATCCATT 588 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 | || ||||||| ||| || |||||||| ||| | | ||||| ||||| | Sbjct 589 TAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATATTATCAATAGCCTTAAAAAGGA 648 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | |||||| | || ||||||||| || || || || || ||||| | Sbjct 649 AATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGGAGAGAGTAAGTTTCACTGT 708 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | | ||| || || | | || || || || ||||||||| |||| | | ||| |||| Sbjct 709 GAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTAACTTCAGGGATTTGTACTT 768 Query 4915 C 4915 | Sbjct 769 C 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426481500187616