Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq59553 98.7 2e-16 seq9867 86.0 1e-12 seq104435 84.2 5e-12 seq15501 82.4 2e-11 >seq59553 Length=7800 Score = 98.7 bits (108), Expect = 2e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||| ||||||||| ||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 3105 GGGCCTGTAGCTCAGTTGGTTAGAGCAGTGGACTCATAATCCATTGGTCCCTGGTTCGAG 3046 Query 2914 TCCGTGTGGGCCCACCA 2930 ||| | |||||||||| Sbjct 3045 TCCAGGCGGGCCCACCA 3029 >seq9867 Length=315 Score = 86.0 bits (94), Expect = 1e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 ||||| ||||||||| ||||||||||| ||||||||||| |||||| | ||||| || Sbjct 183 GGGCCCATAGCTCAGCTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGAAGGTTCAAG 124 Query 2914 TCCGTGTGGGCCCACCA 2930 ||| | ||||||||||| Sbjct 123 TCCTTCTGGGCCCACCA 107 >seq104435 Length=401 Score = 84.2 bits (92), Expect = 5e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 2852 GGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCG 2911 ||||||| |||||||||| |||||||||| ||||||||||| |||| | |||||| Sbjct 83 GGGGGCCCATAGCTCAGTTGGTTAGAGCATCCGACTCATAATCGGCAGGTCGAAGGTTCG 24 Query 2912 AGTCCGTGTGGGCCCACCA 2930 ||||| | ||||||||||| Sbjct 23 AGTCCTTCTGGGCCCACCA 5 >seq15501 Length=293 Score = 82.4 bits (90), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 2851 TGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTC 2910 || |||| ||||||||||| ||| |||||| ||||| ||||| |||||||||||| Sbjct 61 TGAGGGCGTATAGCTCAGTTGGT-AGAGCATCTGACTCTTAATCAGACGGTCCACGGTTC 119 Query 2911 GAGTCCGTGTGGGCCCACCA 2930 ||||||||||| |||||||| Sbjct 120 GAGTCCGTGTGCGCCCACCA 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104181586650176