Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_030948.1 Length=167619 Score E Sequences producing significant alignments: (Bits) Value seq60648 86.0 7e-12 seq34388 84.2 2e-11 >seq60648 Length=4437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 87081 TGGTGAGGGCGGAGGGAATCGAACCCTCAACCTACGGATTAAAAGTCCGTTGCTCTAACC 87140 ||||||| ||| ||||| ||||||||| |||||| ||||||||||| |||||||| ||| Sbjct 4256 TGGTGAGCGCGCAGGGATTCGAACCCTGGACCTACTGATTAAAAGTCAGTTGCTCT-ACC 4314 Query 87141 AATTGAGCTACACCCTC 87157 || |||||||| | ||| Sbjct 4315 AACTGAGCTACGCGCTC 4331 >seq34388 Length=241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 122141 TGTATCAGCGTTCGGCTGATGCCTTCCTAGGGGTTCCCTTCAATATCGCGTCCTACGCCC 122200 |||||||||| ||||| ||| |||||| || ||||||||||||||||| |||||||| Sbjct 64 TGTATCAGCGCTCGGCAGATATCTTCCTGGGTGTTCCCTTCAATATCGCTTCCTACGCAT 123 Query 122201 TCCTAACGCATATCATGGCCGCTTACTGTGGCCTGAAGGTTGGTGACCTCATCATGTCGT 122260 | || || || || ||||| | | ||||| |||| || || ||||| || Sbjct 124 TGCTGACACACATGGTGGCCCATGTCACAGGCCTCAAGGCCGGCGAGTTCATCCACACGC 183 Query 122261 TTGGTGACTTGCACATTTATAACAATCACCTAGATCAGG 122299 | ||||| ||||| ||| || ||||| || |||| Sbjct 184 TGGGTGATGCCCACATCTATTCAAACCACCTTGAACAGG 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535521136679680