Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq60379 132 7e-26 seq59718 122 1e-22 >seq60379 Length=4852 Score = 132 bits (146), Expect = 7e-26 Identities = 218/310 (70%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 99144 TCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGA--AGAA 99201 ||||| |||| |||| ||| | ||| ||| |||||| | ||| |||| || Sbjct 2064 TCATGCAACAATATCTCGATCTTATGTCTCATGTAATGGAAAACGGCA--CCGATAAGGG 2007 Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 || || || || || ||||| | ||| |||| || || |||||||||||| || || Sbjct 2006 CGATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGATTTGAG 1947 Query 99262 AGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAAC 99320 ||||| |||||||| || || || || ||| ||| |||| |||||||| ||| | Sbjct 1946 CGAAGGTTTTCCGCTCGTGACAACGAAAAAGCT-TCATTTGCGGTCGATTATCATCGAGC 1888 Query 99321 TGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTA 99380 | | ||||||||| |||||||||||| | | | || || ||||| || | | Sbjct 1887 TTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGTGTCGA 1828 Query 99381 TTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGC 99440 ||||||| || ||| | || ||||||| || |||||||||||||| | ||||||| Sbjct 1827 TTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATATCAGTGGC 1768 Query 99441 GGTCTTGGCC 99450 | || ||||| Sbjct 1767 GCTCATGGCC 1758 >seq59718 Length=6799 Score = 122 bits (134), Expect = 1e-22 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 99201 AAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGC 99260 |||| || || ||||| ||||| || |||| || |||| |||||||| || || Sbjct 2256 AAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGA 2197 Query 99261 AAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAAC 99320 | ||||| |||||| | || || || | ||| | | |||||||||||||||| Sbjct 2196 ACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAAC 2137 Query 99321 TGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTA 99380 | | |||||| || ||||||| ||||| |||| ||| |||| || | || | | Sbjct 2136 TCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAA 2077 Query 99381 TTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGC 99440 |||||||||||||| | | ||||||| |||| || || || ||||| | || ||| Sbjct 2076 TTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGGA 2017 Query 99441 GGTCTTGGCCTG 99452 | |||||||||| Sbjct 2016 GATCTTGGCCTG 2005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715486456518400