Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq59718 95.1 2e-14 seq106576 91.5 2e-13 >seq59718 Length=6799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 202587 CCAGATGCGGTTTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCT 202646 ||| ||||| ||||| ||| |||||| || || | || ||||||||| | ||| | Sbjct 2216 CCAAATGCGTTTTGATTTGAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTT 2157 Query 202647 CCGTTCTATCATTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCT 202706 | || || |||||||| || | |||||| || |||| ||||||||||||| || || Sbjct 2156 AAGATCGATTATTCACGAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCT 2097 Query 202707 GAACGATAACGGGGTCACTATCTGGGACGAATGGGCGCGGGATGAA 202752 || || || |||| || |||||||||||||| ||||||| Sbjct 2096 AAAAGAGCACAACGTCAAAATTTGGGACGAATGGGC---GGATGAA 2054 >seq106576 Length=385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 202538 ATGAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGT 202597 ||| ||||| |||||||| ||||| ||||| | || || |||||||||| Sbjct 293 ATGTAAAGAGTGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGATGCGGT 234 Query 202598 TTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCA 202657 | || | | ||||| ||||| |||| ||||| |||||| | ||||| ||||| | Sbjct 233 TCGATTTAAGTGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAATCTATTA 174 Query 202658 TTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACG 202717 || | ||||| || |||||| | || || |||||||| || | || || | || |||| Sbjct 173 TTTATGAGCTTCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAGAGAACG 114 Query 202718 GGGTCACTATCTGGGACGAATGGGC 202742 | || |||||| | || ||||| Sbjct 113 GAGTTCGCATCTGGAATGATTGGGC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787244416192000