Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq1346 120 3e-22 seq95498 96.9 4e-15 seq60251 95.1 1e-14 >seq1346 Length=358 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 142557 ATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGGCATTAGC 142616 |||||||||||||||||||| |||||| |||||| ||| ||| |||||||||||||| Sbjct 134 ATCGTCTTCACCTTTACGATAAGGGTTTGCTAACCAATCTTGATTGTCATTGGCATTAGC 193 Query 142617 ATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCAGACGACA-GACCACGAATAT 142675 || ||| || || || |||| | | |||||| ||||| | || ||| || |||| Sbjct 194 ATCCCATGTTTTGGTGCCAATTTTTCTGAAATCCGCTGC-GTTATCATAACCGCGGATAT 252 Query 142676 AACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGTGTCTAATGGAC 142735 |||| | || ||| ||||| | | |||||| ||||||| | ||||| |||| ||| Sbjct 253 AACCAATCATTTCCGCAATAGCAGATTTATAGTAACTTTTTCTGGTGGTAACTAACGGAA 312 Query 142736 ATT 142738 ||| Sbjct 313 ATT 315 >seq95498 Length=505 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 142531 CCCTGTACACCATAAACCCGGCCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAAC 142590 || || | |||||||||||| |||||||| || ||||||||||| | | || || | | Sbjct 353 CCTTGAATACCATAAACCCGTCCCATATCATCCTCACCTTTACGGTAAGCATTATTGAGC 294 Query 142591 CATGCTTCATTCTCATTGGCATTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCT 142650 ||| | ||||| ||| ||||| |||| ||| || || || || | | || ||||| Sbjct 293 CATACATCATTTAAATTAGCATTCGCATCCCATGTTTTAGTGCCTAATTTACGAAAATCA 234 Query 142651 GCTGCA-GACGACAGACCACGAATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAA 142709 || ||| | | | |||||| ||||| |||| | || ||||| | | |||| |||| Sbjct 233 GCAGCATTATCATA-ACCACGGATATATCCCAAAAACTCAGCAATAGCAGATTTAAAAAA 175 Query 142710 ACTTTTACGAGTGGT 142724 |||||||| || || Sbjct 174 GCTTTTACGTGTCGT 160 >seq60251 Length=5058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 ||||| | ||| |||||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 2202 AATGGTGCGCCCGACAGGACTCGAACCTGTAACCTACGGCTTAGAAGGCTGTTGCTCTAT 2261 Query 66461 CCAGCTGAGCTA 66472 |||| ||||||| Sbjct 2262 CCAGTTGAGCTA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521402826021120