Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq106576 127 3e-24 seq60379 120 4e-22 seq19780 100 4e-16 seq59718 98.7 1e-15 >seq106576 Length=385 Score = 127 bits (140), Expect = 3e-24 Identities = 177/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 99518 TAAAG-GCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTA 99576 ||||| | ||||||||||||||||| || | | ||||| |||| ||||| || Sbjct 290 TAAAGAGTGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGATGCGGTTCG 231 Query 99577 ATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTC 99636 |||| |||||| || ||| |||| || || || | ||||| ||||||||| Sbjct 230 ATTTAAGTGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAATCTATTATTT 171 Query 99637 ATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCG 99696 |||| || || |||||| | || || || ||||||| | || || |||| ||||| | Sbjct 170 ATGAGCTTCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAGAGAACGGAG 111 Query 99697 TCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGC 99756 | ||||||||||| |||| | |||| || ||||||||||| || ||||| || | | Sbjct 110 TTCGCATCTGGAATGATTGGGCAGACGAAAATGGTGACTTAGGCCCAGTATATGGCCACC 51 Query 99757 AGTGGCG 99763 | ||||| Sbjct 50 AATGGCG 44 >seq60379 Length=4852 Score = 120 bits (132), Expect = 4e-22 Identities = 184/257 (72%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 99518 TAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAA 99577 ||| ||||| || || || || ||||| ||| | ||||| ||||| |||||||| | Sbjct 2012 TAAGGGCGATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGA 1953 Query 99578 TTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTC 99636 |||| ||||||||||| || || || || || ||| ||| | || || ||||| | Sbjct 1952 TTTGAGCGAAGGTTTTCCGCTCGTGACAACGAAAAAGCT-TCATTTGCGGTCGATTAT-C 1895 Query 99637 AT-GAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGC 99695 || || || | ||||||||| || |||||||||| | || ||||| || ||| Sbjct 1894 ATCGAGCTTTTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGC 1835 Query 99696 GTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAG 99755 || | || ||| |||| |||| | || || || || | ||||||||||||||| | Sbjct 1834 GTGTCGATTTGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATAT 1775 Query 99756 CAGTGGCGGTCTTGGCC 99772 |||||||| || ||||| Sbjct 1774 CAGTGGCGCTCATGGCC 1758 >seq19780 Length=279 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 99618 CACCTCCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAG 99677 ||||| || || || || |||| | || ||||||||| || |||||||| | | || Sbjct 257 CACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGCGATACCAACATCAAG 198 Query 99678 TACCTGAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTA 99737 | ||||| || ||| || || ||||||||||| |||| | | ||||||||||| | Sbjct 197 TGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGATGAGAACGGTGATCTC 138 Query 99738 GGACCGGTATACGGAAAGCAGTGGCGGTCTTGGCC 99772 || ||||| || || | ||||||||||| ||||| Sbjct 137 GGCCCGGTCTATGGTCACCAGTGGCGGTCATGGCC 103 >seq59718 Length=6799 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 99519 AAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAAT 99578 |||| || || || || || ||||| || | ||||| | |||||||||||| || Sbjct 2260 AAAGAAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGAT 2201 Query 99579 TTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCAT 99638 ||| ||||||||||| |||| || || | ||| | | || |||||||| Sbjct 2200 TTGAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCAC 2141 Query 99639 GAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTC 99698 |||||| | |||||| || |||| || ||||| | | |||| || ||||| || |||| Sbjct 2140 GAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTC 2081 Query 99699 ACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAG 99758 | || ||| | || |||| | || | || || | || || || |||||| | || Sbjct 2080 AAAATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAA 2021 Query 99759 TGGCGGTCTTGGCCCGA 99775 ||| | |||||||| || Sbjct 2020 TGGAGATCTTGGCCTGA 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733273354917120