Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031045.1 Length=157855 Score E Sequences producing significant alignments: (Bits) Value seq9867 87.8 2e-12 seq59553 86.0 6e-12 >seq9867 Length=315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 19041 GGCCCCGTAGCTCAG-TGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 19099 || ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 183 GGGCCCATAGCTCAGCTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGAAGGTTCAAG 124 Query 19100 TCC 19102 ||| Sbjct 123 TCC 121 >seq59553 Length=7800 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19041 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 19099 || || |||||||||| |||||||||||| ||||||||||| ||||||| ||||||| || Sbjct 3105 GGGCCTGTAGCTCAGTTGGTTAGAGCAGTGGACTCATAATCCATTGGTCCCTGGTTCGAG 3046 Query 19100 TCCAGCCAGGGTCACCA 19116 ||||| | || ||||| Sbjct 3045 TCCAGGCGGGCCCACCA 3029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504318967084800