Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq98262 91.5 4e-14 seq60251 86.0 2e-12 >seq98262 Length=464 Score = 91.5 bits (100), Expect = 4e-14 Identities = 165/239 (69%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 26965 CCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTC 27024 ||||||||| ||| ||| || |||||| | | | | ||| ||||| ||| || || Sbjct 352 CCATTTACGTGTTTGCAAACGGCCTTCTACATAAATCGCGCTACCTTTTTTCAGATACTC 293 Query 27025 ACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTT 27084 ||| || ||||| || | || | || |||| ||||||||| || | |||| Sbjct 292 ACCTGCAATTTCTGCTAAACGGCGATACATCACAATATTGTGCCATTCGGTTTTTTCTT- 234 Query 27085 TGGTT--CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | || |||| | ||||||||||| ||||| | ||| ||||| || | ||| | Sbjct 233 -GCTTAACGCCGCTT---TTATCTTTCCAGTTTTCTGATGTAGCAATACTAAAATTACAA 178 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGATTAA 27201 |||||||| || |||||||||||||||||||| || ||||| || || | ||| Sbjct 177 ACTGCGCCGCCATCTGGCATGTAGCGCACTTCTGGGTCACGTCCTAAGTTGCCTACTAA 119 >seq60251 Length=5058 Score = 86.0 bits (94), Expect = 2e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 25285 CAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCCGGTTGAGCTATG 25344 ||||| ||||||||| ||||||| |||||||||||||| ||||||||| ||||||||| | Sbjct 2216 CAGGACTCGAACCTGTAACCTACGGCTTAGAAGGCTGTTGCTCTATCCAGTTGAGCTACG 2275 Query 25345 GG 25346 || Sbjct 2276 GG 2277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133842291141120