Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq61575 145 2e-30 seq76311 102 2e-17 >seq61575 Length=3672 Score = 145 bits (160), Expect = 2e-30 Identities = 296/431 (69%), Gaps = 9/431 (2%) Strand=Plus/Plus Query 15342 ATCACCGCGCTGCCGGCCAACCCCGACACGGCGCGGGGGTTCAGTGCCAATGTGATCCTC 15401 ||||| |||||||| || || || || || || || |||||| || |||||| || | Sbjct 3243 ATCACTGCGCTGCCAGCTAATCCTGATACAGCACGCGGGTTCTCGGCAAATGTGTTCTTG 3302 Query 15402 GACGAATTCGCCTTTCACGCCAAGTCGCGC-GAGATCTGGGCGGCGCTCTTCCCGGTCGT 15460 || ||||| ||||| ||| | | || | || |||||| ||| || || ||||| | Sbjct 3303 GATGAATTTGCCTTCCACCGCGACA-GCACAGAAATCTGGAAGGCACTTTTTCCGGTGAT 3361 Query 15461 GTCCAAGGGCGATCAGAAGCTGCGGGTGATCAGCACGCCCAACGGCAAGGGCAACAAGTT 15520 || ||| |||||| || || | | |||||||| ||||| || |||||||| Sbjct 3362 CTCGGCGGGGTG---GAAGCTTCGCGTTACCTCAACGCCCAATGGCAAAGGTAACAAGTT 3418 Query 15521 CTTCGAGCTGATGACGGCCGA-GGACAGTGTCTGGTCGCGCCATGTGGTCGATATCTACG 15579 | || || ||||| |||| || | | |||||| ||| ||||||||| || Sbjct 3419 TTATGAACTCATGACCTCCGAAGGTGACCG-CTGGTCAAAGCATACGGTCGATATTTATC 3477 Query 15580 AGGCCGT-GCGCCAGGGCTGCCCGCGCGATGTGGACATGCTGCGCGCCGGGATCGCGGAC 15638 | ||||| || ||||| || || ||| | || ||||| | || | || || Sbjct 3478 AAGCCGTTGCTGATGGGCTTCCA-CGAGATATTGATGAACTGCGTGAAGGCCTTGCTGAT 3536 Query 15639 GAGGATGCCTGGGCGCAGGAATACGAGCTGAAATGGCTGGATGCCGCCAGCGCCTGGCTC 15698 || ||||| ||||| || || |||||||| ||||||||||| | |||||||| ||||| Sbjct 3537 GAAGATGCATGGGCTCAAGAGTACGAGCTTAAATGGCTGGACGAAGCCAGCGCGTGGCTT 3596 Query 15699 GATTACGACCTGATCTCCGCCTGCGAACGCGAGGAGGCCGGCAAGCCAGAGCTTTACCAG 15758 |||||| ||||| || || || ||| ||| |||| || | || || || || Sbjct 3597 TCTTACGATCTGATTTCAGCATGTGAAGACGAAAAGGCTGGTGACCCTGACGGCTATCAA 3656 Query 15759 GGCGGCCCCTG 15769 |||||||| || Sbjct 3657 GGCGGCCCTTG 3667 >seq76311 Length=1237 Score = 102 bits (112), Expect = 2e-17 Identities = 188/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 9658 CGCATCGATTTCGGCCCCGAACTGCAGGTCGCGAAGGAGCTGATCGACGACTGCCTGCTG 9717 || || |||||||| || | || || | || || |||||||| ||||| |||||| Sbjct 531 CGTATTGATTTCGGGCCGCAGCTCCAAATTGCCAAAGAGCTGATTGACGAGTGCCTGAAC 472 Query 9718 GAATGGACGGAAGGC-GCGCGCGAGGAACTGCGCGCCGTGATCACCCGCGCTTTCCAGAC 9776 ||||||| || | | ||| | | || | || || | |||| ||||| ||| | || Sbjct 471 GAATGGAGCGAGGACAGCGATCC-GAAAATCCGAACCATCGTCACGCGCGCCTTCAATAC 413 Query 9777 CGACAAGACCGGCCAGGTCAACCGGGCGAACATCTTCATGCTGTTGCGCCTGGAAATCGC 9836 ||| || ||| || ||||| | | |||||||||||| |||| || ||||| Sbjct 412 CGATCAGGAAGGCAAGATCAACAAATCTGAAATCTTCATGCTGATGCGGCTCTCAATCGA 353 Query 9837 CGATGAGCGGTGGCGCAGCGCGATGGAGGCAATCCGCGATGCAATGCGTGTGGTCGGCAC 9896 ||| || |||| || || ||||| ||||||||||| ||||||||||| |||| | Sbjct 352 AGATCCACGCTGGCTCAAAGCCATGGATGCAATCCGCGACGCAATGCGTGTAACCGGCTC 293 Query 9897 GAAGACGTATTTCCGCGGCTACCGGCGCGCGAC 9929 || ||| ||||| ||| |||||| || Sbjct 292 CAAAGAATATGTCCGCTTTTACAAGCGCGCAAC 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123791335896640