Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq105687 84.2 7e-12 >seq105687 Length=390 Score = 84.2 bits (92), Expect = 7e-12 Identities = 243/371 (65%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 40001 CTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCAT 40060 ||||| || || ||| | | | | ||| |||| || |||| || ||| |||| || Sbjct 373 CTTGGAGAGTTTGTCGGCAAGCCCGTAGGACTTGCCCTGCACCCGGGCCACGTCGCGCAC 314 Query 40061 ---CGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCC 40117 ||| ||| |||| ||| |||||||| ||||| | ||| || ||| Sbjct 313 TACCGCCTTGGCCGCC---ATCGTGCCGAAGGTAATAATCTGCGACACCGCCTCGCGCCC 257 Query 40118 GTACTTCTCGGTGACGTACCTGATCACGTCGCCCCG--TCGCCGGTCATCGAAGTCGATG 40175 ||| | || | ||||||| ||||||| | | || | || || ||| || | | Sbjct 256 GTAGGTGTCCGCGACGTACTCGATCACGAGGTCGCGCTTTTCCATGCA--GAAATCCACG 199 Query 40176 TCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40235 || | || ||||||||||| || ||||||||||| || |||||||| | | ||| Sbjct 198 TCGAAATCCGGCATGGACACCCGTTCGGGGTTCAGAAAGCGCTCGAACAGCAAGTCGTAT 139 Query 40236 GGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAG 40295 | || || || || || || | || |||| || ||||| || |||||| | ||| Sbjct 138 TCCAGCGGATCGAGATCGGTAATCTCCAGCGAGTACGCCACCAGTGAGCCGGCACCGGAG 79 Query 40296 CCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40355 ||||| || || || ||| | |||| || ||||||| ||||||||| || Sbjct 78 CCACGCCCCGGGCCCACCGGGATATCGTTGCGTTTAGCCCAGCGGATGAAGTCCATCACA 19 Query 40356 ACCAGGAAGTA 40366 | ||| ||||| Sbjct 18 ATCAGAAAGTA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159933228697856