Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq81249 116 1e-21 >seq81249 Length=935 Score = 116 bits (128), Expect = 1e-21 Identities = 153/208 (74%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 33296 AGAATTTGATTGCGTTGTATTCGCTCTATCTCAGCTTAGCCGCAACTTAGAGAACAGACC 33355 ||| ||| ||||| ||| |||| ||||| |||||||| || || |||||| |||| Sbjct 611 AGAGTTTAATTGCCCTGTTATCGCACTATCACAGCTTAGTCGTAATCTAGAGAGTCGACC 552 Query 33356 TAACAAACGTCCAGTTAATGCTGATCTCCGCGAATCTGGC-CAATTGGAGCAGGATGCGG 33414 |||||||| || ||||| ||||| | || |||||||| | |||| |||||||||| | Sbjct 551 CAACAAACGGCCTATTAATTCTGATTTGCGTGAATCTGGTGCGATTG-AGCAGGATGCCG 493 Query 33415 ACGTGATTCTATTCATTTACCGCGACGAAGTTTACGAC-AAGAA----CTCAAAAGATGC 33469 | || ||| | || || || || || ||||| ||| || ||||| || | ||| Sbjct 492 ATGTTATTGTCTTTATCTATCGAGATGAAGTGTACAACGAAGAAAGTGCTGATAAG---- 437 Query 33470 AGGAACTGCTGAAATCATCATCGGAAAG 33497 |||| ||| ||||| |||||||| ||| Sbjct 436 -GGAATTGCCGAAATAATCATCGGTAAG 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130106339891264