Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq106576 129 9e-25 seq59718 123 4e-23 seq60379 111 2e-19 seq19780 111 2e-19 >seq106576 Length=385 Score = 129 bits (142), Expect = 9e-25 Identities = 187/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 201831 ACGGGGATGTAAAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGA 201890 |||| ||||||| |||||||| || || |||||| |||||| || |||| Sbjct 299 ACGGAAATGTAAAGAGTGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGA 240 Query 201891 TGCGCTTTAACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTT 201950 |||| || | ||| ||||| || || |||| ||||| |||||| | |||||| | Sbjct 239 TGCGGTTCGATTTAAGTGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAAT 180 Query 201951 CAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAG 202010 | || || ||||||| || |||||| | | ||||||||||| || | ||| | ||| Sbjct 179 CTATTATTTATGAGCTTCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAG 120 Query 202011 ACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGT 202070 | ||| || ||||||| | || ||||| || |||| |||||||||||||| || | Sbjct 119 AGAACGGAGTTCGCATCTGGAATGATTGGGCAGACGAAAATGGTGACTTAGGCCCAGTAT 60 Query 202071 ACGGTAAGCAATGGCGTAGCTGGA 202094 | || | |||||||| | |||| Sbjct 59 ATGGCCACCAATGGCGCAATTGGA 36 >seq59718 Length=6799 Score = 123 bits (136), Expect = 4e-23 Identities = 206/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTA-AAAGCCGA 201849 ||||| ||||||| |||||| | | | ||| || ||||| | | | |||| || Sbjct 2311 ATGAAGCAATATCACGACTTATTACAGCACATTCTGGACAACGGA-ACGAACAAAGAAGA 2253 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 || || || || || || || ||||| || ||| ||||| ||| | || | || Sbjct 2252 TCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGAACGA 2193 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 |||||||||| |||| || |||||| | ||| | | || || || || || || | Sbjct 2192 AGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAACTCTT 2133 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 |||||| | || |||||||||||| ||||| | ||||| ||||||||| || || Sbjct 2132 ATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAATTTG 2073 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||||||||||| || | || || | || || || ||||| | |||||| Sbjct 2072 GGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGG 2018 >seq60379 Length=4852 Score = 111 bits (122), Expect = 2e-19 Identities = 205/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGA-CTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCG 201848 |||| |||||||||| || |||| || | |||| |||||||| | || | || Sbjct 2063 CATGCAACAATATCTCGATCTTA-TGTCTCATGTAATGGAAAACGGCACCGATAAGGGCG 2005 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 | || |||||||| || || | |||||||| || | |||||||| || | || | Sbjct 2004 ATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGATTTGAGCG 1945 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 ||||||||||||| || || || |||||| |||| | || || || ||| ||||| Sbjct 1944 AAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTGCGGTCGATTATCATCGAGCTTT 1885 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 | |||||||| || || ||||| || | | ||||| || ||| | || | Sbjct 1884 TATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGTGTCGATTT 1825 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||| || ||||| ||| |||| || || | || ||||| ||||| | || ||||| Sbjct 1824 GGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATATCAGTGGCG 1767 >seq19780 Length=279 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 201941 CACCTTCGTTCAATCATCCATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAG 202000 |||||||| || |||||| ||| ||||||||||||| || || ||||||||| || Sbjct 257 CACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGCGATACCAACATCAAG 198 Query 202001 TATTTGAAAGACAACAACGTCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTA 202060 | |||| || ||||| || || |||||| | |||||||| ||| | |||||||| | Sbjct 197 TGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGATGAGAACGGTGATCTC 138 Query 202061 GGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||||| || ||| | || ||||| Sbjct 137 GGCCCGGTCTATGGTCACCAGTGGCG 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786928048433920