Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq106576 93.3 7e-14 seq59718 87.8 3e-12 >seq106576 Length=385 Score = 93.3 bits (102), Expect = 7e-14 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 200081 ACGGGCATGTAAAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGA 200140 |||| ||||||||| |||||||| || | |||| | |||| ||| |||| Sbjct 299 ACGGAAATGTAAAGAGTGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGA 240 Query 200141 TGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTT 200200 |||| ||| || || || || ||||| |||| || || || |||| || || | Sbjct 239 TGCGGTTCGATTTAAGTGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAAT 180 Query 200201 CCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACG 200260 | || ||| | ||||| | |||||| | ||||||||||||||||| || ||||| | | Sbjct 179 CTATTATTTATGAGCTTCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAG 120 Query 200261 ATAACAATGTCACCATTTGGGACGAATGGGCGCGAGACGAAA 200302 | ||| || ||| ||| | || ||||| |||||||| Sbjct 119 AGAACGGAGTTCGCATCTGGAATGATTGGGC---AGACGAAA 81 >seq59718 Length=6799 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200200 TCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAAC 200259 || || |||||||| || || |||||| | | || |||||||| ||||||||||| || Sbjct 2152 TCGATTATTCACGAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAA 2093 Query 200260 GATAACAATGTCACCATTTGGGACGAATGGGCG 200292 || |||| |||| |||||||||||||||||| Sbjct 2092 GAGCACAACGTCAAAATTTGGGACGAATGGGCG 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782291183616000