Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq59718 159 5e-34 seq60379 141 1e-28 seq106576 140 5e-28 seq19780 132 7e-26 >seq59718 Length=6799 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 |||| || || || || || || || | || |||| || || || ||||||||||| Sbjct 2260 AAAGAAGATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGAT 2201 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 || | |||| || ||| |||| || |||||||||||| | |||| || || ||| Sbjct 2200 TTGAACGAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCAC 2141 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||||| || |||||| || | ||||||||||||||| ||||||| ||||| |||||||| Sbjct 2140 GAACTCTTATGGTTCTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTC 2081 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGG 196297 | || ||||| || ||||| ||||||||||| | || || || || ||||| Sbjct 2080 AAAATTTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGG 2028 >seq60379 Length=4852 Score = 141 bits (156), Expect = 1e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || || ||||| || || || ||| |||| || ||||||||||||| || || || Sbjct 2005 GATCGGACCGGTACAGGTACACGTTCTGTTTTTGGCCATCAGATGCGTTTCGATTTGAGC 1946 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 |||| || ||||| || || || |||||| | || |||| || || ||| ||| || Sbjct 1945 GAAGGTTTTCCGCTCGTGACAACGAAAAAGCTTCATTTGCGGTCGATTATCATCGAGCTT 1886 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 || ||||||||| |||||| ||||| || | || ||||| || ||| || Sbjct 1885 TTATGGTTCCTGCGCGGCGATACCAATATTGGCTGGCTCAAAGAAAATGGCGTGTCGATT 1826 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 |||||||| ||||| |||||| ||||||||||||| || || ||||| | |||||||| Sbjct 1825 TGGGATGATTGGGCCGATGAAAATGGCGATCTTGGACCGGTATACGGATATCAGTGGCGC 1766 Query 196311 GCATGG 196316 ||||| Sbjct 1765 TCATGG 1760 >seq106576 Length=385 Score = 140 bits (154), Expect = 5e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 196070 TGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCG 196129 ||||||||| ||||| ||||||| | |||| || ||||||||||| || || | | Sbjct 283 TGACCGTACTGGCACTGGCACCAAAAGTGTTTTTGGTTATCAGATGCGGTTCGATTTAAG 224 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 |||| ||||| |||| ||||| |||||||| ||||| |||||| || | || || Sbjct 223 TGAAGGATTCCCTATGGTAACCACAAAAAAGTTACACCTTAAATCTATTATTTATGAGCT 164 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | |||||| | ||||| |||||||| || | ||||| |||| ||| || | || Sbjct 163 TCTATGGTTCTTAAACGGTGACACCAATATAAAATATCTTCAAGAGAACGGAGTTCGCAT 104 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||| |||| |||||||| ||| |||| || | ||||| || || || | || ||||| Sbjct 103 CTGGAATGATTGGGCAGACGAAAATGGTGACTTAGGCCCAGTATATGGCCACCAATGGCG 44 >seq19780 Length=279 Score = 132 bits (146), Expect = 7e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 196149 ACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGC 196208 || || || || ||||||| || || |||||| ||| || ||||||||||| |||| Sbjct 272 ACAACGAAGAAACTGCACCTTCGCTCCATCATCATTGAATTGCTGTGGTTCCTGCGCGGC 213 Query 196209 GACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGAT 196268 || ||||||||| ||| ||||| || ||||| || | |||||| |||| ||||||||| Sbjct 212 GATACCAACATCAAGTGGCTGAATGAGAACAAGGTGACGATCTGGAATGAATGGGCAGAT 153 Query 196269 GAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGCATGG 196316 || | || ||||| ||||| ||||| ||| | |||||||| ||||| Sbjct 152 GAGAACGGTGATCTCGGCCCGGTCTATGGTCACCAGTGGCGGTCATGG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769256192856320