Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq59475 123 2e-23 seq18708 120 2e-22 seq101358 118 7e-22 seq81249 91.5 1e-13 seq31766 89.7 3e-13 >seq59475 Length=8474 Score = 123 bits (136), Expect = 2e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 |||||||| || ||||| || | | | ||| |||| | || ||||| || ||| Sbjct 7628 CCAGCATAATTTTCAAAACGAGTAAACTCGCCCAACCAAGCGAGTCGAACCGTCCCGATT 7569 Query 96755 GGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGG 96814 |||||||| |||||||| | |||||||| ||| |||| || || ||| | ||||| Sbjct 7568 GGGCCATTACGTTGCTTACTGATAATTATTTCGCCAATACCTTTTTGATCGGTGTCCGGC 7509 Query 96815 TGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCT 96874 | || ||||| | ||||| | ||||||||| | || ||||| |||||||| || || Sbjct 7508 TCGTAGACTTCATGACGATAAATAAACATGATGATATCGGCGTCTTGCTCAATCGCACCA 7449 Query 96875 GATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTA 96934 || ||||| | ||| || | || || ||||||| | || || || || |||||| Sbjct 7448 GACTCACGAAGATCAGACATCACTGGCCGTTTGTTTGGCCGTTGCTCTAGGCTTCGATTG 7389 Query 96935 AGTTGTGA 96942 || ||||| Sbjct 7388 AGCTGTGA 7381 >seq18708 Length=281 Score = 120 bits (132), Expect = 2e-22 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 97647 CATATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTT 97706 |||| || |||||||| ||||||||||| || |||||||||||| || || |||| Sbjct 19 CATAACCCGCTTCAGCAATTTCATTTGCCACACTAATCATTTCACGTGTTACTGCACGTT 78 Query 97707 CACGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCT 97766 |||| || ||||||||||| || |||||||||||| || |||||||| || ||| | Sbjct 79 CACGTACAATATCCGCATAGGCTGTAATATTTGCCGCACTTGGCGTGTTTTTCATCATTT 138 Query 97767 CCGCAAGGTACGCAAAACCACCGGCGCGTTCTAA---TTTACCGTTCTGTTCAAGTGCTT 97823 | || || || ||||||| || || |||||| || | |||| ||| | |||| Sbjct 139 CAGCGAGATAAACAAAACCGCCAGCATCTTCTAACTTTTGATCGTT---TTCTAACGCTT 195 Query 97824 CAGCAAGTGTTATCAAATCAA 97844 | | | ||||| ||||||| Sbjct 196 CTGATAAGGTTATTAAATCAA 216 >seq101358 Length=430 Score = 118 bits (130), Expect = 7e-22 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 96721 TTGGCCGTTAAAAGCCAATCTCAC-CGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAA 96779 ||| || |||| | ||||| || ||| |||||||| || || ||||| || |||| || Sbjct 231 TTGCCCAATAAAGGTCAATCGAACGCGT-CCAATTGGACCGTTACGTTGTTTACCGACAA 173 Query 96780 TTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAAACTTCGTCGCGATACAAAA 96839 | | || || |||| || ||||||||| |||| |||||| || || ||||| | || Sbjct 172 TAATTTCTGCGGTGCCTTTATCTTCGCTATCGGGGTTATAAACCTCATCTCGATAGATAA 113 Query 96840 ACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCG 96899 | | |||| || || || ||||||||||| || ||||| || ||||| | || | Sbjct 112 ATAAAATCAAATCGGCATCTTGCTCAATTGCGCCAGATTCGCGCAAATCACTCATGACAG 53 Query 96900 GTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTTGTGACAATGCCAC 96951 ||||||| || | ||||| || |||| | || || || ||||| | |||||| Sbjct 52 GTCGTTTATCAGGCCGCTGCTCTAAGCCA-CGGTTGAGCTGTGAAAGTGCCAC 1 >seq81249 Length=935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 96746 GTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCG 96805 ||||| || || || |||| ||||| ||||| |||| |||||||| ||||| | Sbjct 387 GTGCCTATGGGACCGTTTCTCTGCTTACCGATGATTATTTCGGCAATTCCCTTATCAGCA 446 Query 96806 CTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCA 96865 || || || || ||||| || ||||| | ||| | || | || || ||||||||| Sbjct 447 CTTTCTTCGTTGTACACTTCATCTCGATAGATAAAGACAATAACATCGGCATCCTGCTCA 506 Query 96866 ATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGT 96908 || || || |||||||| ||||| ||||| | || ||||||| Sbjct 507 ATCGCACCAGATTCACGCAAATCAGAATTAATAGGCCGTTTGT 549 >seq31766 Length=247 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 96938 TGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAA 96997 || ||||| || || || || ||||||||||| || || ||||| || ||||||||||| Sbjct 8 TGAGACAAAGCAACAACAGGCACTTGTAATTCTTTTGCTAACGCTTTTAGTGAGCGAGAG 67 Query 96998 ATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGG 97057 || || |||||||| | || || |||||| | | || | ||||| | ||||| Sbjct 68 ATTTCAGCAATTTCTAAAGTACGATTATCTGAAAATTGTGGCGCACGCATTAATTGCAAA 127 Query 97058 TAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAA 97117 || || ||||| ||||| | || |||| || || || ||| || || | || Sbjct 128 TAATCAATCATGATCATCGAAATCCCCCCATGATCACGATGAATACGTCGTGCTCTAGAG 187 Query 97118 CGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATT 97164 || | ||| || ||||||| | || ||||||||| | || || Sbjct 188 CGAACCTCGGTTGGCGTCAACCCTGCTGCATCATCAATATACATTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330459008103232