Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq59718 152 2e-32 seq34388 91.5 6e-14 >seq59718 Length=6799 Score = 152 bits (168), Expect = 2e-32 Identities = 328/484 (68%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 51747 GATCGGACGGGTGTAGGTACTCGATCGGTTTTCGGCGCTCAACTTAGGTATGACCTGAGT 51806 ||||| || || ||||||| ||||||||| ||| ||| | | | ||| ||| Sbjct 2254 GATCGCACAGGAACAGGTACTACATCGGTTTTTGGCTACCAAATGCGTTTTGATTTGAAC 2195 Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866 | || || ||| ||||| || || ||| |||| || ||| | | || | Sbjct 2194 GAAGGTTTTCCGTGTATCACAACGAAAAAGTTGCACTTAAGATCGATTATTCACGAACTC 2135 Query 51867 CTGTGGTTGCTTTCG-GGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925 | ||||| ||| | ||| || ||| |||| |||| | || || ||||| || Sbjct 2134 TTATGGTT-CTTGCAAGGCGACACCAACATCAAGTATCTAAAAGAGCACAACGTCAAAAT 2076 Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 |||||||||||||||||||||| |||| |||||||||||||| || || | || ||| | Sbjct 2075 TTGGGACGAATGGGCGGATGAAGATGGGAACCTGGGTCCTGTTTACGGACACCAATGGAG 2016 Query 51986 TAGTTGGGATGCTGG---TGGCGGCAAGGTCATCGATCAGATCCATGAAGTCG-TCAAAT 52041 |||| || ||| |||||| | ||| ||||| ||| | ||||| | | | | Sbjct 2015 ATCTTGGCCTGATGGAAATGGCGGTAC---CATTGATCAAATC-ACGAAGTTGGTTGATT 1960 Query 52042 CAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATT 52101 || | || ||| |||| ||| || ||||||| || ||||||||||| || | || Sbjct 1959 CATTAAAAAACAATCCGGATTCAAGAAGGCACATCGTTTCTGCTTGGAACGTTGCCGACG 1900 Query 52102 TGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTA 52161 | || | ||||| || | || || ||| | | ||||||||||| || ||||| || | Sbjct 1899 TTGACAACATGGCCTTACCGCCTTGTCATTCTTTGTTCCAATTCTACGTTGCTGACGGAA 1840 Query 52162 AGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACA 52221 | | ||||| ||||| || | || || | ||||| |||||||| ||||||| Sbjct 1839 AATTAAGCTGCCAATTGTACCAAAGAAGCGCGGATACTTTCTTAGGCGTTCCATTTAACA 1780 Query 52222 TTGC 52225 |||| Sbjct 1779 TTGC 1776 >seq34388 Length=241 Score = 91.5 bits (100), Expect = 6e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 52122 CCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTAT 52181 || |||||| || ||||| |||||||| ||||| || | ||| |||||||| |||||| Sbjct 9 CCGTGCCATTGCCTGTTCCAGTTCTATGTTGCTGACGGCAGGCTGTCGTGCCAGTTGTAT 68 Query 52182 CAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTG 52241 ||||| || || || || ||| |||| ||||| || || || || ||| | |||||| Sbjct 69 CAGCGCTCGGCAGATATCTTCCTGGGTGTTCCCTTCAATATCGCTTCCTACGCATTGCTG 128 Query 52242 ACGCA 52246 || || Sbjct 129 ACACA 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189849601366720