Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq65192 84.2 3e-11 seq60251 84.2 3e-11 seq6671 84.2 3e-11 >seq65192 Length=2464 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 165786 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 165845 ||||||||| ||||||||||| || ||||||||| || ||||||||||||||| |||||| Sbjct 2287 GTAGCTCAGCTGGATAGAGCACCTCCCTTCTAAGGAGGCGGTCACAGGTTCGAATCCTGT 2228 Query 165846 C 165846 | Sbjct 2227 C 2227 >seq60251 Length=5058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 165786 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 165845 |||||||| ||||||||||||| ||||||||||| || ||| ||||||||||||||||| Sbjct 2274 GTAGCTCAACTGGATAGAGCAACAGCCTTCTAAGCCGTAGGTTACAGGTTCGAGTCCTGT 2215 Query 165846 C 165846 | Sbjct 2214 C 2214 >seq6671 Length=327 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||| | |||||||||| |||||||||| ||||||||||| | |||| ||||||||| Sbjct 4 ATTCCCCAATAGCTCAGTTGGTAGAGCGATGGACTGTTAATCCATGTGTCACTGGTTCGA 63 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||| | | ||||| Sbjct 64 GCCCAGTTTGGGGAGC 79 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||| | |||||||||| |||||||||| ||||||||||| | |||| ||||||||| Sbjct 123 ATTCCCCAATAGCTCAGTTGGTAGAGCGATGGACTGTTAATCCATGTGTCACTGGTTCGA 182 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||| | | ||||| Sbjct 183 GCCCAGTTTGGGGAGC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621221647146240