Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq108602 143 6e-29 seq97248 136 9e-27 seq14831 131 4e-25 seq87644 102 2e-16 seq44811 84.2 5e-11 >seq108602 Length=371 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | ||| |||||||| |||||||| ||||| ||||| | || |||| Sbjct 127 CTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTT 186 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||||| ||| || || |||||||| ||||| ||||| | | ||||| Sbjct 187 CTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCC 246 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || |||||| | || | | |||| || || || || | Sbjct 247 TCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAG 306 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || |||||||| || |||| ||||||| Sbjct 307 GTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq97248 Length=461 Score = 136 bits (150), Expect = 9e-27 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| ||||| | ||||||||| |||||||| || ||||||||||| | ||| ||| Sbjct 403 CTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTT 344 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||||| ||||| || |||||||| | ||||| || || | | ||| | Sbjct 343 CTTCCATCTTCTAATTGCTTT--CCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGC 286 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 |||| || |||||||| || ||||| | || | | ||||| ||| || || | Sbjct 285 CTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTA 226 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || | |||||| ||||||| ||||| || Sbjct 225 AGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATT 180 >seq14831 Length=294 Score = 131 bits (144), Expect = 4e-25 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| |||||||| || | |||||||||||||||||| ||||| || ||||| ||||| || Sbjct 152 TCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGCTAAGGTTCTTCC 93 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| |||| ||| || || ||||| || ||||| ||||| | | ||| ||||| || Sbjct 92 ATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGGGATGCCTTCTTT 33 Query 152009 TTCTTGAATTTT 152020 ||||||||||| Sbjct 32 GTCTTGAATTTT 21 >seq87644 Length=678 Score = 102 bits (112), Expect = 2e-16 Identities = 104/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| |||||||| ||||| ||||| || || ||||| || | ||| ||||| || Sbjct 365 TCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGTTCTTCC 306 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| ||||| ||||| ||||| | || || || || | | |||||||| Sbjct 305 ATCTTCTAATTGCTTT--CCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCT 248 Query 152007 TTTTCTTGAATTTT 152020 || ||||||||||| Sbjct 247 TTATCTTGAATTTT 234 >seq44811 Length=222 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || |||||||| || || || |||||||| |||| | |||| Sbjct 53 CTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTT 112 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || ||||| | ||||| || || |||||||| || || || || | | |||| Sbjct 113 CTACCGTCTTCCAATTGCTTT--CCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATTC 170 Query 152002 CTTCCTTTTCTTGAATTTT 152020 |||| || || ||||| || Sbjct 171 CTTCTTTGTCCTGAATCTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152207170072992