Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq59983 107 6e-19 >seq59983 Length=5794 Score = 107 bits (118), Expect = 6e-19 Identities = 186/267 (70%), Gaps = 5/267 (2%) Strand=Plus/Minus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 |||||| || || | | || |||||||||||| |||| || || ||| |||||| || Sbjct 294 CCATTTTCGGGTTTGTAACTTGCCTTCGATGTAGACCTTTGAGCCCTTTTTAAGGTACTC 235 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTT 36640 || || ||||| |||| ||| | | || | ||||||||| || | |||| Sbjct 234 GCCGGCCACTTCGCCAAGGCGATTGAACAAGGTGATTCTATGCCACTCGGTGCGCTCTTG 175 Query 36641 CTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAAT 36700 || || || | ||| |||||||| | || |||||||| ||| ||||| |||| Sbjct 174 GCGCTCGCCGGTGTTCTTGTCTTTCCAATTTTCCGATGTTGCTACGCTGATGTTTGCAAT 115 Query 36701 TGCAGAACCTGATGCT-GAATATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAA 36759 || | || | || | ||||| |||||| |||||||| || | | | || || |||| Sbjct 114 CGCGGCGCC-GTTGTTCGAATAACGAACTTCTGGGTCGTTACCCAAATTACCAACGATAA 56 Query 36760 TTACTTTATTTACGCCGCGTGCCATTT 36786 ||||||| ||||| || |||||||| Sbjct 55 TTACTTTGTTTACACC---TGCCATTT 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151886072797824