Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq95498 143 2e-29 >seq95498 Length=505 Score = 143 bits (158), Expect = 2e-29 Identities = 309/462 (67%), Gaps = 0/462 (0%) Strand=Plus/Minus Query 51816 TATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCAGGGTTCCAAAAAGTTAAAA 51875 |||||||||| || | || || || || |||||||||| || || ||||| ||| | Sbjct 505 TATGCATACAAGGCCTTAAACAGCCCATATGAAATTCCCCCGGATTATAAAAACTTAGTA 446 Query 51876 TTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGCTAACTGATCAA 51935 ||||| ||||||| ||||| ||| | |||| |||| | ||| || || || | Sbjct 445 TTTCTGCACGATCATCAATGCCTTTACTCAAGTTATCTACTATTTTCTGCAATTGGTCTA 386 Query 51936 ATACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACTCGTCCCATAT 51995 | ||||||| |||| |||| ||| ||||||| |||||| || |||||||||| Sbjct 385 TTGTGCCGCCATCAGGTTTAGCCCAAGCACGACCTTGAATACCATAAACCCGTCCCATAT 326 Query 51996 CATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATTTGCATTAGCAT 52055 ||||||| ||||||||| | | |||| ||||| || |||| ||| ||||| |||| Sbjct 325 CATCCTCACCTTTACGGTAAGCATTATTGAGCCATACATCATTTAAATTAGCATTCGCAT 266 Query 52056 TCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCCACGGAGATATC 52115 |||||| ||| || | || || | || || || || ||||||| ||||| Sbjct 265 CCCATGTTTTAGTGCCTAATTTACGAAAATCAGCAGCATTATCATAACCACGGATATATC 206 Query 52116 CGATCATTTCCATTATTGCTTGTTTAGCAAATGCTTTACGAGTAGTTACTAGCGGCAGTT 52175 | | | || || || |||| ||| |||||| || |||| | ||| | || Sbjct 205 CCAAAAACTCAGCAATAGCAGATTTAAAAAAGCTTTTACGTGTCGTTATCATCGGGAATT 146 Query 52176 CTCCTGCTCCTACGTTAAAGGTAAAGTCTGCATCAATAATGGTTAGGCAACGAACCCCTG 52235 | | | |||||| | || ||||||| ||||| |||| || || |||| Sbjct 145 CATTTTGGGCAACGTTATATTCTAAATCTGCATTAATAACCGTTAAACAGCGTTTACCTG 86 Query 52236 TTCTAGGATTCGTTACCCATACACCCTCTTCAAGAATACGTT 52277 | | |||| ||||| ||| | ||||| |||||||| Sbjct 85 TGCGTTCATTCTCAACCCAAGTACCTTGTTCAACAATACGTT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 364765309981152