Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq85905 84.2 3e-11 seq78207 82.4 9e-11 seq61629 82.4 9e-11 >seq85905 Length=734 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 17 AGGGGCGTTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGAA 76 Query 17918 TCCGCTATTCTCCA 17931 ||| || ||||| Sbjct 77 CCCGTTACGCTCCA 90 >seq78207 Length=1114 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| |||||||||| ||| ||||| ||||||||||||||||| |||| |||||||| Sbjct 874 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGATC 815 Query 17919 CCGCTATTCTCCA 17931 ||| ||| ||||| Sbjct 814 CCGTTATCCTCCA 802 >seq61629 Length=3641 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 158117 TGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAGC-T 158174 |||| ||||| |||| |||||| ||| | ||||||||||||| ||| |||||||| | Sbjct 3222 TGGAGGGGTGGCCGAGCGGTTGAAGGCACCGGTCTTGAAAACCGGCGTGCGTGAGAGCGT 3281 Query 158175 TCCGTGGGTTCGAATCCCACCC 158196 ||||||||||||||||||||| Sbjct 3282 ACCGTGGGTTCGAATCCCACCC 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595493598456320