Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq19544 132 1e-25 seq64925 129 1e-24 seq61373 125 1e-23 seq64606 114 3e-20 seq96680 113 9e-20 seq59582 113 9e-20 seq7701 105 1e-17 seq12128 104 5e-17 seq61340 87.8 4e-12 seq88486 84.2 5e-11 >seq19544 Length=280 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282887 AAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATC 282946 |||||||| ||| | ||| || || ||||| ||||| |||| | || | ||||| Sbjct 64 AAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTTCCATC 123 Query 282947 CTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTC 283006 |||| ||| || || ||||||||||| | |||||| || || ||||| ||||| || Sbjct 124 TTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCCTTATC 183 Query 283007 TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 ||| ||||| | ||||| |||| ||||| || || |||||| || || || || || Sbjct 184 TTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGTAATGGT 243 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || ||||| ||||| || || |||||||| || Sbjct 244 CTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATT 279 >seq64925 Length=2519 Score = 129 bits (142), Expect = 1e-24 Identities = 312/466 (67%), Gaps = 16/466 (3%) Strand=Plus/Plus Query 301327 TTCATCACCGGCGGCGTTTCAAGTTCATTGGGGAAAGGCCTCGCTGCTGCGAGTATCGCC 301386 ||||| ||||| || ||| | ||| | || |||||| | || || || ||||| Sbjct 1828 TTCATAACCGGAGGGGTTGTATCTTCTCTTGGTAAAGGCATTGCCGCGGCATCGCTCGCC 1887 Query 301387 AGTTTACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCCCTATATCAAC 301446 | | || ||| || | ||||| | | || | ||| | ||||||||||||||| Sbjct 1888 ACACTTCTTGAGTCTAGAGGGTTAAAAGTGACCCTGATGAAACTTGACCCCTATATCAAC 1947 Query 301447 GTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGT 301506 ||||| || || || |||||||||| || || || || ||||| || || || || ||| Sbjct 1948 GTCGACCCAGGCACAATGAGCCCGATGCAGCACGGTGAGGTGTTTGTAACCGACGACGGT 2007 Query 301507 GCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCATTAACC---CTTAAG 301563 |||||||| ||| | ||| | ||||| ||||| || || | ||| | ||| || | | Sbjct 2008 GCTGAAACTGATTTAGATTTAGGGCATTACGAGCGATTTA-TTCGT--ACCAAGCTGACG 2064 Query 301564 CGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAA----GTTATCGAAAATGAACG 301619 | ||| |||||| || ||||| | |||||| | ||||| | || || || Sbjct 2065 CAGAAAAATAATTTCACTACTGG----GCGTATTTACGAGCGCGTTATAAAGAAAGAGCG 2120 Query 301620 CGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACCGATGAAAT-CA 301678 ||| ||||| || || ||||| ||| |||| || |||||| ||||||| | Sbjct 2121 GCGCGGTGATTATCTTGGCGGTACAGTGCAGGTTATTCCTCATATCACCAATGAAATGAA 2180 Query 301679 AAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGGAGAAATTGGAGGAA 301738 |||| || | | || || |||| | || || | | ||||| || |||| Sbjct 2181 AAAGGCGATTGAAGATGGC-GCTGGCGATGTTGACGTAGCGCTAGTCGAAATCGGCGGAA 2239 Query 301739 CGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCA 301784 | || || ||||| || || | |||||| ||||||| ||||| || Sbjct 2240 CTGTTGGTGATATTGAGTCATTGCCTTTTCTAGAAGCTATTCGCCA 2285 >seq61373 Length=3794 Score = 125 bits (138), Expect = 1e-23 Identities = 255/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | || |||||||||||| | |||||||| || | | || | | ||||||||| Sbjct 2293 AAATTAGATCCCTATATCAACATTGATCCGGGTACTTTAAATCCTTATGAGCATGGAGAA 2234 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 ||||| |||||||||||||| ||||| ||| ||||| |||| |||||||||||||| Sbjct 2233 TGTTTCGTAACGGATGATGGTGCAGAAACGGATTTGGATTTGGGACACTACGAACGTTT- 2175 Query 301546 ACTTCATTAACCCTTAAG---CGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAA 301602 || | | || || | | | || ||| | ||||| || ||| ||||| | Sbjct 2174 -TTTAAATGTTCC-TACGTCTCAGGCAAACAATGTGACGACGGG--AAG--AATTTACCA 2121 Query 301603 ----GTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658 ||||| ||||| ||||| ||| | | | || || || || |||||| |||| Sbjct 2120 GTCTGTTATTGAAAAAGAACGTCGTGGTGAATTTTTAGGGAAAACAGTTCAAGTTATTCC 2061 Query 301659 CCACATCACCGATGAAATCAAAAGAAGAATTCACAT-TGCGG-----CTGAAAAATCAGA 301712 |||||||| ||||||| ||| | | ||||| || ||| || | | | || Sbjct 2060 TCACATCACTAATGAAATTAAAGAACGTATTCAAATCCTCGGAAAGAGTGGAGATTACGA 2001 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 ||| | ||| |||||| || || || || || ||||| ||||| ||||| | | || Sbjct 2000 TATTGTAATTACAGAAATCGGTGGTACAGTTGGTGATATTGAATCACTTCCATACGTTGA 1941 Query 301773 AGCGATTCGTCA 301784 ||| ||||||| Sbjct 1940 GGCGGTTCGTCA 1929 >seq64606 Length=2588 Score = 114 bits (126), Expect = 3e-20 Identities = 249/370 (67%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||| ||||| || || | | ||| || ||||| || | |||| |||| || Sbjct 1916 CAAGCCTCGACCTCTGAACTTTTCGGTAAAGTTCAAGAAGAACGGCAAAATGAAAACACA 1975 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || ||| |||| |||||||| ||||| || ||||| || || | || |||||| | Sbjct 1976 CCCTTTCATCCGCGGAGTCCGTATGGAGTTGCGAAACTTTACGGCTTTTGGATCATGCGA 2035 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 ||||| || ||||||| |||||| || ||| |||| ||||| || | ||| Sbjct 2036 AATTACAAAGAAGCGTATGGCATGTTCAACTGCAATGGAATTTTATTCAACCATGCCAGT 2095 Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTC 44223 || | || || | ||| ||||| || |||||||| | || ||||| |||||| Sbjct 2096 CCGAGAAGGGGAGAAACGTTTGTGACGCGGAAAATCACAATGGCCGTTGCCAATATTCAT 2155 Query 44224 AACGGGACAGAAAAATGCATGTAT-CTAGGAAACATAGACTCTAAAAGAGATTGGGGATA 44282 ||| | || ||| | || || || || || | ||| | | | || |||||| | Sbjct 2156 CTCGGTA-AGCAAAGTAAATTAATGCTTGGTAATCTTGACGCAATGCGCGACTGGGGACA 2214 Query 44283 TGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGACTA 44342 || |||||||| | | || ||| |||||||||||||||| | ||||||| || Sbjct 2215 CGCTAAAGATTATGTCTACGGAATTTGGTTGATGTTGCAACAAGAAACCCCAGACGATTA 2274 Query 44343 CGTTATTGCA 44352 ||| ||||| Sbjct 2275 CGTACTTGCA 2284 >seq96680 Length=487 Score = 113 bits (124), Expect = 9e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | ||||||||| ||||||| ||||| || || ||||| ||| ||| ||||| ||| Sbjct 181 AAACTCGACCCCTATCTCAACGTTGATCCCGGCACCATGAGTCCGTATCAGCATGGCGAA 122 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 ||||| || || || || || ||||||||||| || ||||| || ||||||||||| || Sbjct 121 GTGTTTGTCACCGACGACGGGGCTGAAACCGACCTCGATCTCGGCCACTACGAACGCTTT 62 Query 301546 AC 301547 || Sbjct 61 AC 60 >seq59582 Length=7566 Score = 113 bits (124), Expect = 9e-20 Identities = 258/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||| |||| || || |||||||| ||| || |||| || |||| ||||| || Sbjct 1121 CAAGCTGCGACCTCTGAATTGTACGGTTTGGTGCAAGAGACGCCGCAAAGAGAAACTACG 1062 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || ||||| || || ||||||| || || || ||||||||||| ||||| | Sbjct 1061 CCATTTTACCCTCGCTCGCCATATGCGGTTGCTAAACTATATGCCTACTGGATAACGGTA 1002 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 |||||||| ||||| || || ||||| | |||||| |||| || ||||| | ||| Sbjct 1001 AATTATCGTGAGTCCTACGGCATGTTTGCCTGTAATGGTATTTTATTTAATCATG--AGT 944 Query 44164 CCCAAC--AGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTT 44221 | | || | || | ||| || || || ||||| || ||| | || |||||| Sbjct 943 CGCCACGTCGGGGCGAAACGTTTGTAACCCGAAAAATTACCCGAGCCTTGGCCAATATTG 884 Query 44222 TCAACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 44281 |||| |||| ||||||| || || || ||| | |||||||||| Sbjct 883 CACACGGTTTAGAACCTGTTGTGTATCTTGGGAATATGGACGCACTGCGAGATTGGGGGC 824 Query 44282 ATGCCTTGGATTATG-TAGAAGCCATGTGGCTGATGTTGCAACAAGA-CAGGTCAGACGA 44339 ||||| ||||| | | | | || |||||||||||||| ||||| || | | || || Sbjct 823 ATGCCAAAGATTACGTTCGCATGCA-ATGGCTGATGTTGCAGCAAGAGCAAG-CTGATGA 766 Query 44340 CTACGTTATTGCAACTGGAAA 44360 || || ||||| ||||| || Sbjct 765 TTATGTCATTGCTACTGGCAA 745 >seq7701 Length=325 Score = 105 bits (116), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||||||| |||| || |||||||| |||||||| || || || ||||| |||||| Sbjct 114 GACCCCTATCTCAATGTAGATCCGGGAACGATGAGTCCTTACCAGCACGGAGAGGTGTTC 55 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTT 301544 ||||| |||||||| || || || ||||||||||| || || || || ||||| Sbjct 54 GTGACCGATGATGGCGCGGAGACTGATCTGGATCTCGGCCATTATGAGCGTTT 2 >seq12128 Length=306 Score = 104 bits (114), Expect = 5e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| |||||| || || |||||| | ||||| || || || ||||| ||||||||||||| Sbjct 10 TTTACCAAGCCTCTACTTCGGAGCTTTACGGTAAAGTCCAAGAGATCCCTCAAACAGAAA 69 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTT 44098 || || ||||| || ||| || |||| |||||| || | ||||| ||||||| || Sbjct 70 CAACGCCTTTTTACCCTCGGTCACCCTATGCTGTGGCAAAAATGTATGCTTATTGGA-TT 128 Query 44099 GTA-AAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAA 44138 ||| || ||||| ||| | ||||| || | || ||||| Sbjct 129 GTAGTGAACTATCGAGAGGCTTATGGAATTTACGCCTGTAA 169 >seq61340 Length=3809 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| || | ||||||||||| || |||||| ||| |||||| || ||||| || Sbjct 3747 GACCCTTACCTAAACGTCGATCCCGGCACGATGTCACCGTATCAACACGGTGAAGTCTTT 3688 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 || || || ||||| ||||||||||| || ||||| || || || || ||||| || Sbjct 3687 GTCACCGACGATGGCGCTGAAACCGACCTTGATCTTGGCCATTATGAGCGTTTTAC 3632 >seq88486 Length=656 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||| || Sbjct 135 TTAGTATAGGGGTAAGTATCCCTGCCTGTCACGCAGGAGACCCGGGTTCGATTCCCGGA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045275324761408