Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq59922 212 7e-50 seq75063 170 2e-37 seq14334 98.7 1e-15 >seq59922 Length=6033 Score = 212 bits (234), Expect = 7e-50 Identities = 630/964 (65%), Gaps = 42/964 (4%) Strand=Plus/Minus Query 23153 TCATTTTTTAAAAATCTTCATCTAAAGTGAA--TTTCACTGCTTTATCACTATTCATAAC 23210 || || | ||||||||||| || | |||||| ||| | || |||| | |||| ||| Sbjct 1212 TCTTTCTCTAAAAATCTTCGTCGATAGTGAAGGTTTGAT--CTGAATCATTGTTCAAAAC 1155 Query 23211 ACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGA 23270 || |||||| ||||| ||||| | |||| || || || || || || | | ||| Sbjct 1154 TCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGA 1095 Query 23271 TATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTC 23330 || ||||||| ||||||||||| || | | || |||| || | |||||| Sbjct 1094 AATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTC 1035 Query 23331 CTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACC 23390 | || | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || Sbjct 1034 CAACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCC 975 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATC--- 23447 |||| || || |||| || ||| | ||| ||| ||||| ||| || || Sbjct 974 GATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTCAAG 915 Query 23448 TTTAATTATTTGAACAAT---------AACTTCTTC-ACTAGGTGGATATTTTAAATACT 23497 ||||| | ||||| | || || || || | |||| | | | Sbjct 914 GATAATTTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTGGTTGGTGT------- 862 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | ||||||||||| |||||||| || | ||||| || || || || || |||| Sbjct 861 ---ATAATAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAG 805 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 | || | | |||||||| | ||||| ||| || | ||| | |||| | || || | Sbjct 804 AGAAAGAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAAC 745 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | || |||||||| || || || || ||||| || ||||| | | |||||| | | Sbjct 744 CTGAGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGATCC-- 687 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 ||| |||||| | ||||| || || | || ||||| || ||||| | Sbjct 686 ----TTCATCAATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGT 631 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 |||| || || || | | | ||| || | | ||| | || || ||||| |||| | Sbjct 630 CAATAGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAA 571 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 |||| ||||||| ||||| ||||||| || | || ||||| || ||| || | | Sbjct 570 GCGAATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTG 511 Query 23858 CTTCAGACAATTGAACATC--ATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACC 23915 | |||| | ||||| || | | ||| ||| | ||||| ||||| || ||||| || Sbjct 510 CCTCAGTATACTGAACTTCTGACAAGAAATTCTCT--GCTAAGTTTTCATTTACAATTCC 453 Query 23916 ATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--GTTGAT 23973 ||| || || || ||||| | |||| ||| | |||||| | ||||| | ||| | Sbjct 452 ATCTGATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAG 393 Query 23974 AAT-TTTTTCCAATC-ATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAAC 24031 | | | |||||| ||||| |||| | ||||| || || ||||||| |||| Sbjct 392 CTTCGTATCCCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAAC 334 Query 24032 TTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGA 24091 | || ||| || || | |||||| |||| ||||| |||||||||| || | Sbjct 333 TAGCTTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAA 274 Query 24092 ATCT 24095 |||| Sbjct 273 ATCT 270 >seq75063 Length=1318 Score = 170 bits (188), Expect = 2e-37 Identities = 549/845 (65%), Gaps = 28/845 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||| || ||||||||| || | || ||||||||| ||||| || || || | Sbjct 101 CATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTG 160 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||| || | ||||| | || ||||||||| | ||| | ||||| | Sbjct 161 AAGTGAAATCATGTCCATCCATTCGAATGGATTAACTGCATTGAAGT--GCTTT----GG 214 Query 23325 TAATTCCTT--TAAA----AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 || | | |||| || ||||| || ||||| ||||||||||| | ||| | | Sbjct 215 TACTCCAAGAGTAAAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTT 274 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 || ||||| || |||| ||| || | | ||| ||| ||| ||||| | Sbjct 275 GCTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGC 334 Query 23439 AACAGCATCTTTAATTATTTGAACAATAACTTCTT-CACTAGGTGGATATTTTAA----A 23493 || || || | | |||| | ||| ||||| || | | | | | |||| | Sbjct 335 TACTGCTTCAGTCAAAATTTCA----TAAATTCTTTCATTTGATACCT-TATTAACCATA 389 Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 | ||| |||| ||||| ||||| ||| ||||| || ||||| || ||||| ||| Sbjct 390 TGTTTATACAACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCA 449 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 ||||| || | |||||||| | || ||||| | ||| || ||||| ||| Sbjct 450 TTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAAAA 509 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 || || || |||||||| || || ||| ||||| || | | | | | |||||| Sbjct 510 GACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAATGAG 569 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 |||| | || | |||||||| | ||| | ||||||| || ||| ||||| Sbjct 570 TCATTCTTATTA---ATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAATA 626 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793 | ||||| || || || || ||| |||||||| ||| | ||||| |||||||| Sbjct 627 TTATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATA 686 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 || | | || ||||| |||| ||| || || | | || || ||||| || ||| Sbjct 687 AGGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCAT 746 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 ||| |||||| | ||| || ||| | || | || | | ||| || ||||| Sbjct 747 CTAACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATT 806 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||| |||||| ||||||||||| || ||||| || || ||||| |||||| | Sbjct 807 CCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTT 866 Query 23974 AATTT---TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 ||||| |||||||| || | |||| | ||||| | || ||| || |||||| Sbjct 867 AATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAG 926 Query 24031 CTTGC 24035 | ||| Sbjct 927 CATGC 931 >seq14334 Length=297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/174 (74%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 23867 ATTGAACATCA-TTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 ||||||| ||| ||| |||| ||| ||||| |||||| || |||||||||||| ||| Sbjct 31 ATTGAACTTCACTTACGAAAT-TTTCAGCTAGATTTTCATTCACAATACCATCAGATGCA 89 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTT---TC 23982 |||||||| || |||| || |||||| |||| | |||||| | || || | || Sbjct 90 GCAAAGAACGCTAGAATATGTTTTATGAAATAACGTTCATCGCTATTCAACTTGTTGGTC 149 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 |||||||||| ||| | | || | ||| ||| | ||||||||||| ||| Sbjct 150 CAATCATTAAGATCCGTGTGCAGGTCTATTTCTTCAGCAGTCCAAAAACTAGCC 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520776481772800