Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19544 100 2e-16 >seq19544 Length=280 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| ||||| | |||| ||||| ||| |||||| ||||| ||||| Sbjct 43 TTGCATTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTA 102 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| | | || || | || || | ||||| || ||||||||||| | || ||| Sbjct 103 ATCAGATAA--GGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGA 160 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | ||||||||| || ||||| ||| | | | || || |||| Sbjct 161 TCTGGTGGGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGAT 220 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| |||||||| || | |||||| || ||||| ||||| Sbjct 221 TGTTCGACGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359511508370784