Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq65525 91.5 2e-13 >seq65525 Length=2385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/254 (68%), Gaps = 12/254 (5%) Strand=Plus/Plus Query 155874 AAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGC 155933 || |||||||| | || || ||| || | ||||| ||| | | | ||||| | Sbjct 1110 AATATTTGAAGTCTACCTTTGAAATCAGGGAGGCCAATCTCTTTATGGATCTCCAATCTG 1169 Query 155934 CCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAA 155993 || |||||||| | |||||| ||||| | || ||||| |||||||| || | |||| Sbjct 1170 CCTGGTCTTAAGACTGCTTCATCAATCATATCTTTCCTGTTAGTCATACCGATTACTAAA 1229 Query 155994 ATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTC- 156052 ||||||| | |||||||| || |||| ||| | || |||||||| || || | || Sbjct 1230 ATGTTGTCAAGGGATTCTACTCCATCTAGTTTTGCTAAAAATTGATTTACAACTGATTCA 1289 Query 156053 ---------GTGCGTGGCGTT--ATCACCGCGTTTTTTACACAGAGCATCTATTTCATCG 156101 |||| || | | | ||| | | | |||||| |||||| |||||||| Sbjct 1290 TGTACACCAGTGCCTGATGATACAGAACCTCTTGGTCTACACACAGCATCGATTTCATCA 1349 Query 156102 AAGACGATAACGTG 156115 |||| |||| ||| Sbjct 1350 AAGATAATAATGTG 1363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666165042597120