Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq108602 156 1e-32 seq97248 125 2e-23 seq44811 113 1e-19 seq14831 96.9 8e-15 seq19544 93.3 1e-13 seq87644 87.8 4e-12 >seq108602 Length=371 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || |||||||| |||||| | || || ||| || ||| Sbjct 344 CAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCTGAC 285 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||| || ||||| ||||| || || ||||| || Sbjct 284 ACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAACAG 225 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| || |||||||| | ||||| || || ||||| | ||||||||| | Sbjct 224 AGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAACATT 165 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||| ||| Sbjct 164 CAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGA 126 >seq97248 Length=461 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || || ||| | || || || ||||| Sbjct 186 CAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAATCAGAT 245 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||| ||||||||||| ||||| || || || || Sbjct 246 ACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 305 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || | ||||||||||| || | | ||||| ||| | Sbjct 306 AGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAACATT 365 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || ||| | || | ||||||||| Sbjct 366 CAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGA 404 >seq44811 Length=222 Score = 113 bits (124), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||| ||||| || ||||| || ||||||||||||||||||||||| || || || Sbjct 216 TCAGATACCATTGACAACGTTAAGACTAAGATTCAGGACAAAGAAGGAATTCCACCAGAT 157 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || ||| |||||||||| || ||||| || | ||||| || || ||||| |||| || Sbjct 156 CAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCCGACTAC 97 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| | || || ||||| || || || | || | ||||| ||| Sbjct 96 AACATTCAGAAGGAATCTACTCTCCACTTGGTCCTCAGACTTAGA 52 >seq14831 Length=294 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| ||||||||||| |||||||| ||||| || |||| ||||| || |||||| Sbjct 21 AAAATTCAAGACAAAGAAGGCATCCCTCCAGACCAACAGAGACTGATCTTTGCAGGAAAA 80 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||||||||| || | || || || || |||||||||| || || | || Sbjct 81 TGCCTTGAAGATGGAAGAACCTTAGCAGACTACAATATCCAAAAAGAGTCTACTATCCAC 140 Query 178125 CTTGTTTTGAGACTCAGA 178142 ||||| | ||| | ||| Sbjct 141 CTTGTCCTTAGATTAAGA 158 >seq19544 Length=280 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || ||||| || || ||||| || || ||| || || Sbjct 273 CAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCCGAT 214 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| || || ||||| ||||| || || || ||| Sbjct 213 ACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAACAA 154 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || | ||||||||||| || | | ||||| || || Sbjct 153 AGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAATATC 94 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||| | || | ||||| ||| Sbjct 93 CAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGA 55 >seq87644 Length=678 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| || ||||||||||| ||||| || || ||| || | ||||| |||||||| Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||||||||| || | | || || || | || |||||||| || || ||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 178125 CTTGTTTTGAGACTCAGA 178142 || || | ||| | ||| Sbjct 354 CTCGTCCTCAGATTAAGA 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202047769879488