Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 >seq9 Length=285593 Score = 197 bits (218), Expect = 2e-45 Identities = 601/920 (65%), Gaps = 14/920 (2%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || || || || || || |||| ||||| || | | ||| | | ||| |||||||| Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 ||||| || | | || || || ||||||| || || || ||| |||| ||||| ||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA-GAC 53889 || |||| | ||||||||| ||||||||||| ||||||| || ||| || ||| || Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 53890 GACACGAGCCTT----TATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA 53945 || | ||||| | || | || | || ||||| | | | | | |||| Sbjct 71019 GA-TTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATACTT----TATGTACA 70965 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 ||||||||| | ||| || |||| | |||||||||| | |||||||| | Sbjct 70964 GCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATTA 70905 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | ||| | || ||| | |||| || ||| || || || | ||||| ||||||| Sbjct 70904 AACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCTA 70845 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||||| ||||| | ||| ||||| || || || ||||| || || | || Sbjct 70844 GAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAGT 70785 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATA-TGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | ||||| |||||| || |||||||| | || || | || | |||||| Sbjct 70784 CGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTTTGCCA 70726 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| || |||| || | ||| || ||| ||||||| | ||||||||| || || Sbjct 70725 CCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCG 70666 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || | | |||||||| || | || || |||| | || | | ||| || || Sbjct 70665 TTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCA 70606 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 || || || || ||||| ||| ||| | ||||||| |||||| || ||| | || Sbjct 70605 AGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATA 70546 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || | |||||||| || ||| | || || |||||| ||||| || | | Sbjct 70545 CCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTGCC 70486 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || |||||||| | ||| || ||||| | |||| | | ||| | | Sbjct 70485 GTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTAGCTCG 70426 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| || | || | |||| ||| || || || || | || ||| Sbjct 70425 TAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCAAGAAC 70366 Query 54545 ATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 || || || |||||||| || | | || ||| ||| | | ||||| | |||| || Sbjct 70365 ATATGTTGGGGTCTTTCTACAACACGTG-AGTTGATTCTTAATAAGTATCCTCTTTCTAA 70307 Query 54604 AGTTTTAAAACCAAAATAGT 54623 || || || ||||||||| Sbjct 70306 TGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718119307120