Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq19 105 7e-18 seq1 86.0 6e-12 >seq23 Length=179919 Score = 123 bits (136), Expect = 3e-23 Identities = 319/482 (66%), Gaps = 8/482 (2%) Strand=Plus/Minus Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 || || |||||| | ||||| ||| | ||||| ||||| || | |||||||||| || Sbjct 162002 AGTGATTGGGAGGGTTTGAAGGACGATGAGCGACATTTTATAAGTTACGTGCTGGCATTC 161943 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || || || || || || || || |||||| ||| | || ||| | || | Sbjct 161942 TTTGCTGCTAGTGATGGAATAGTTCTGGAGAATTTGGCAGGCCGCTTCTTGCGTGAAATT 161883 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | || | ||| | ||||| ||| || || || ||||| ||||| ||| Sbjct 161882 CACATACCGGAAGTGCGCTCGTTCTATTCCTTCCAAATTGCAATGGAAAACGTCCACAGC 161823 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | |||||| | || || ||| | | | || ||| ||| | | Sbjct 161822 GAGACTTATTCGTTATTGATAGATGTGTATTTAAAGGGGAACGAGGCGGAAAAGAGCAGA 161763 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 |||| ||||||||| ||| || | ||| || |||||| |||||||| | Sbjct 161762 CTGTTCAACGCCATCCAGAGCGTGGAGGCCGTGAAGCGGAAGGCGGAGTGGGCAGTCAAG 161703 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT-GGCCTTCGCGGCCGTCGA 117063 ||||| || || | | || | ||| || || | || || ||| | ||||| Sbjct 161702 TGGATGAATCACA---AGAACACTTTTGCCGAACGACTACTAGGATTTTGCG-CAGTCGA 161647 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| |||| ||||| ||| ||| |||||| || ||| |||||||||| || ||| | Sbjct 161646 AGGCATCTTATTTTCTGGCTCTTTTTGCGCCATCTTCTGGTTCAAGAAACGTGGACTCTT 161587 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||||||||| || ||||||||||| ||||| || ||||||||||| || || |||||| Sbjct 161586 GCCCGGCCTCACCTTCAGCAACGAACTCATTTCAAGGGACGAGGGCCTCCACACCGACTT 161527 Query 117184 TG 117185 || Sbjct 161526 TG 161525 >seq19 Length=197207 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || ||||| || || || |||| |||||| | || Sbjct 102019 AATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAAC 101960 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| || | || | |||| || |||| |||||||| || || ||| ||||||| Sbjct 101959 GGACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 101900 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| || || || ||||| || | || || | ||| ||||| Sbjct 101899 ACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAA 101840 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || ||| | ||||| || ||| | |||| || || Sbjct 101839 CATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGAGG 101792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || ||| | || || || || || ||| | || || || |||| Sbjct 102247 AATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCAC 102188 Query 40749 CGACA-GCGTGCAAACGCTC--AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | || ||| | |||| || |||| ||||| || |||||||| | || Sbjct 102187 GGACACGATTG---ACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGA 102131 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || || || || || | ||||||||||||||| || || | | || | ||| || Sbjct 102130 TCAACAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTA 102071 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||||| ||| ||||| || ||| | || ||||| || || Sbjct 102070 CAACATTCAGAAGGAAAGCACACTGCACCTTGTGCTCCGTTTGAGAGGTGG 102020 >seq1 Length=711979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || ||||| || ||| | || | || || || ||||| Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | || | |||| || |||| || || || ||||| || |||| || Sbjct 179724 GACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAA 179665 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| |||||||| |||| || | ||||| || || |||||| Sbjct 179664 CAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAAC 179605 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 179604 ATCCAGAAGGAG 179593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216179527440