Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq19 100 3e-16 seq182 84.2 3e-11 seq172 84.2 3e-11 seq122 84.2 3e-11 seq170 82.4 9e-11 >seq19 Length=197207 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| ||||||| ||| | ||||| || || || || || ||||| ||||| | Sbjct 102247 TCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGA 102306 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | |||| | || || | ||||||||||| || || || |||||||| || | || Sbjct 102307 TAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGG 102366 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||| ||||| | || | || | ||| | || | || | | ||||| Sbjct 102367 GATGCCTTCCTTGT-CATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCA 102425 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || || || || |||| ||||| |||||||| ||||| Sbjct 102426 CCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | ||| || | ||| | ||||| || || || || |||||||| || Sbjct 101792 CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCT 101851 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | ||||| || |||||||||||||| || || ||||| ||||| | || Sbjct 101852 AATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGA 101911 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| | || | || | || | || | ||| | | ||| || Sbjct 101912 ATACCTTCTTTGT-CTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGAC 101970 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || ||||| || | || || || |||||||||||| Sbjct 101971 TTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 >seq182 Length=3036 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| | | ||||||||||||||| ||| |||||||||||||||| ||||| || Sbjct 2423 TTTTCTCCGAGACCGGGAATCGAACCCTGTTCTTCCGCGTGACAGGCGGAAATACTGGCC 2364 Query 60122 ACTATACTA 60130 ||||||||| Sbjct 2363 ACTATACTA 2355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| | | ||||||||||||||| ||| |||||||||||||||| ||||| || Sbjct 2881 TTTTCTCCGAGACCGGGAATCGAACCCTGTTCTTCCGCGTGACAGGCGGAAATACTGGCC 2822 Query 60122 ACTATACTA 60130 ||||||||| Sbjct 2821 ACTATACTA 2813 >seq172 Length=3289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| | | ||||||||||||| ||||| |||||||||||||||| ||||| || Sbjct 1496 TTTTCTCCGAGACCGGGAATCGAACCCGGGTCTTCCGCGTGACAGGCGGAAATACTAGCC 1437 Query 60122 ACTATACTA 60130 ||||||||| Sbjct 1436 ACTATACTA 1428 >seq122 Length=7386 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| | | |||||| |||||| ||||| |||||||||||||||| ||||| ||| Sbjct 169 TTTTCTCCGAGACCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAAATACTAACC 110 Query 60122 ACTATACTA 60130 ||||||||| Sbjct 109 ACTATACTA 101 >seq170 Length=3376 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||| Sbjct 1268 GGGAATCGAACCCGGGTCTTCCGCGTGACAGGCGGAAATACTAACCACTATACTA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814247719320