Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 seq9 98.7 9e-16 seq1 93.3 4e-14 >seq23 Length=179919 Score = 111 bits (122), Expect = 1e-19 Identities = 302/458 (66%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 |||| || ||||||| | ||||| |||| || || || || ||||| || ||| Sbjct 161976 TGAGCGACATTTTATAAGTTACGTGCTGGCATTCTTTGCTGCTAGTGATGGAATAGTTCT 161917 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||||||| | | || | | ||| | || | |||| | | | | || || Sbjct 161916 GGAGAATTTGGCAGGCCGCTTCTTGCGTGAAATTCACATACCGGAAGTGCGCTCGTTCTA 161857 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || ||| | || || |||||||| || || | |||||| || | || ||| Sbjct 161856 TTCCTTCCAAATTGCAATGGAAAACGTCCACAGCGAGACTTATTCGTTATTGATAGATGT 161797 Query 57848 GTACGTGAAGGACAACGACGAGAAAC---GTAGACTGTTCAACGCGATCGAAACAAT--- 57901 ||| | |||| ||||| | | || | |||||||||||||| ||| | | | Sbjct 161796 GTATTTAAAGGGGAACGAGGCGGAAAAGAGCAGACTGTTCAACGCCATCCAGAGCGTGGA 161737 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 | ||| || || |||||| |||||| || |||| ||||| || || | ||| Sbjct 161736 GGCCGTGA-AGC--GGAAGGCGGAGTGGGCAGTCAAGTGGATGAA---TCACAAGAACAC 161683 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 || ||||| | ||| | | || ||| |||||||| || || ||||| ||| || Sbjct 161682 TTTTGCCGAACGACTACTAGGATTTTGCGCAGTCGAAGGCATCTTATTTTCTGGCTCTTT 161623 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 | || || || ||| | |||||||| || || |||||||||| || || |||||||| Sbjct 161622 TTGCGCCATCTTCTGGTTCAAGAAACGTGGACTCTTGCCCGGCCTCACCTTCAGCAACGA 161563 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || || | |||||||| ||||| || || |||| Sbjct 161562 ACTCATTTCAAGGGACGAGGGCCTCCACACCGACTTTG 161525 >seq9 Length=285593 Score = 98.7 bits (108), Expect = 9e-16 Identities = 346/538 (64%), Gaps = 2/538 (0%) Strand=Plus/Minus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||| || || |||||||| || | ||| || | || ||||| || ||||| || || Sbjct 71200 CGAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCA 71141 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 |||||||| | | || || |||||||| ||||||||||||||| ||||||| || Sbjct 71140 GAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTC 71081 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||| | | | | ||||| || || || | || || | | || || ||| | Sbjct 71080 CTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAA 71021 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 | || || | | || || || | |||| | ||| |||||| ||||| | | Sbjct 71020 CGATTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATACTTTATGTACAGCTC 70961 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||| || || ||| || | | || || || || |||||||| | ||| Sbjct 70960 TTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATTAAACT 70901 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG-A 23384 ||| ||| || || | | ||| || || || | |||||||||||| ||| | Sbjct 70900 CCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGC-TAGAA 70842 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | | || | || | | || ||||| || |||||| | || | |||||| | Sbjct 70841 ATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAGTCGA 70782 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 |||| || |||||||| ||||| | ||| | || || | |||| | || || | Sbjct 70781 ACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTGCGTTTGCCACCTC 70722 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 | || || || || || || || ||| | ||||| ||||| || | || ||||| Sbjct 70721 CTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCGTT 70664 >seq1 Length=711979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| || || || | || | || ||||| || | Sbjct 179785 CATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCAC 179726 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || || | || ||| ||||||||| | || || || || Sbjct 179725 CGACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCA 179666 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | |||||||| |||||||| ||||| || ||| | ||||| || Sbjct 179665 ACAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAA 179606 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || | || || || || ||||| || |||||| Sbjct 179605 CATCCAGAAGGAGTCTACCATCCACCTTGTCCTCAGACTCAGAGGCGGT 179557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763786694480