Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 214 2e-50 >seq9 Length=285593 Score = 214 bits (236), Expect = 2e-50 Identities = 607/924 (66%), Gaps = 13/924 (1%) Strand=Plus/Minus Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 |||| || || || || || || |||| ||||| || | | ||| | | ||| |||| Sbjct 71203 CAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAG 71145 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| ||||| || | | ||||| || ||||||| || || || ||| |||| |||| Sbjct 71144 TGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACG 71085 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | ||||| |||| | |||||| || ||||||||||| || |||| || ||| || || Sbjct 71084 CGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACC 71025 Query 63124 A-GACGACTCGAGCCTT----TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGT 63178 | |||| | | ||||| | || | || | || ||||| | | | || | Sbjct 71024 ATAACGA-TTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATAC-TTTA---T 70970 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 |||| ||| ||||| | ||| || |||| | || ||||||| | ||||| Sbjct 70969 GTACAGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACA 70910 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| || ||| | || ||| | |||| || ||| || || || | ||||| || Sbjct 70909 CATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAG 70850 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||||| ||||| ||||||| ||| ||||| || || || ||||| || || | Sbjct 70849 AGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAAT 70790 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTT 63417 || | | | ||||| |||||| || |||||||| || || || | || | |||| Sbjct 70789 AAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTT 70731 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 || ||||| || |||| || | ||| || ||| ||||||| | ||||||||| | Sbjct 70730 TGCCACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGA 70671 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 | ||||| | | | |||||||| || | || || ||| | || | | ||| || Sbjct 70670 TTCCGTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAA 70611 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 || || || || || ||||| ||| ||| | ||||||| |||||| || ||| Sbjct 70610 CTGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAA 70551 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 | || ||| | || ||||| || ||| | || || |||||| ||||| || | | Sbjct 70550 ATATACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTC 70491 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 | || || ||||| || |||||||| | ||| || ||||| | |||| | | || Sbjct 70490 TTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTA 70431 Query 63718 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63777 | | ||| |||| || | || | |||| ||| || || || || | || Sbjct 70430 GCTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCA 70371 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 ||||| || || |||||||| |||| ||| ||| | || ||||| | ||| Sbjct 70370 AGAACATATGTTGGGGTCTTTCTACAACACGTGAGTTGATTCTTAATAAGTATCCTCTTT 70311 Query 63838 CCAAAGTTTTAAAACCAAAATAGT 63861 | || || || || ||||||||| Sbjct 70310 CTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813907694320