Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 203 4e-47 >seq9 Length=285593 Score = 203 bits (224), Expect = 4e-47 Identities = 606/925 (66%), Gaps = 15/925 (2%) Strand=Plus/Minus Query 65737 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 65796 |||| || || || || || || |||| ||||| || | | ||| | | ||| |||| Sbjct 71203 CAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAG 71145 Query 65797 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 65856 |||| ||||| || | | || || || ||||||| || || || ||| |||| |||| Sbjct 71144 TGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACG 71085 Query 65857 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 65916 | ||||| |||| | |||||| || ||||||||||| || |||| || ||| || || Sbjct 71084 CGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACC 71025 Query 65917 A-GACGACTCGAGCCTT----TATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT 65971 | |||| | | ||||| | || | || | || ||||| | | | | | Sbjct 71024 ATAACGA-TTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATACTT----TAT 70970 Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 |||| ||| ||||| | ||| || |||| | |||||||||| | ||||| Sbjct 70969 GTACAGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACA 70910 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||| || ||| | || ||| | |||| || ||| || || || | ||||| || Sbjct 70909 CATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAG 70850 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 ||||| |||||| ||||| | ||| ||||| || || || ||||| || || | Sbjct 70849 AGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAAT 70790 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTT 66210 || | | | |||| |||||| || |||||||| || || || | || | |||| Sbjct 70789 AAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTT 70731 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270 || ||||| || |||| || | ||| || ||| ||||||| | ||||||||| | Sbjct 70730 TGCCACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGA 70671 Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA 66330 | || || | | | |||||||| || | || || |||| | || | | ||| || Sbjct 70670 TTCCGTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAA 70611 Query 66331 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 66390 || || || || || ||||| ||| ||| | ||||||| |||||| || ||| Sbjct 70610 CTGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAA 70551 Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 | || || | |||||||| || ||| | || || |||||| ||||| || | | Sbjct 70550 ATATACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTC 70491 Query 66451 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 66510 || || ||||| || |||||||| | ||| || ||||| | |||| | | || Sbjct 70490 TTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTA 70431 Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 66570 | | ||| |||| || | || | |||| ||| || || || || | || Sbjct 70430 GCTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCA 70371 Query 66571 TTAACATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 ||||| || || |||||||| || | | || ||| ||| | || ||||| | || Sbjct 70370 AGAACATATGTTGGGGTCTTTCTACAACACGTG-AGTTGATTCTTAATAAGTATCCTCTT 70312 Query 66630 TCCAAAGTTTTAAAACCAAAATAGT 66654 || || || || || ||||||||| Sbjct 70311 TCTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168941461960