Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19 105 7e-18 seq1 87.8 2e-12 >seq19 Length=197207 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 || || |||||||| |||||| || || || || ||||||||||| || || | Sbjct 102056 TCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAA 102115 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TG 139692 |||||||| || ||||| ||||| |||||||| ||||| ||| | || | ||| | Sbjct 102116 ATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACAAC 102174 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| ||||||||||| || | ||| | |||||| || || ||||| || || Sbjct 102175 GTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGAC 102234 Query 139753 GAATATTTGCAT 139764 || || ||||| Sbjct 102235 AAAGATCTGCAT 102246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||| || ||||| |||||| | ||| | || || || || |||||||| | Sbjct 101828 TCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAA 101887 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 |||||||| || || || || || || ||||||||||| ||| | || | ||| | || Sbjct 101888 ATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGTC-TTGAATCTTGGCCTTAACGGT 101946 Query 139694 -TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || || | ||| || || || || || | || | ||||||||| ||||| ||||| || Sbjct 101947 ATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGAC 102006 Query 139753 GAATATTTGCAT 139764 ||| |||||||| Sbjct 102007 GAAGATTTGCAT 102018 >seq1 Length=711979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| || |||||||| || || ||||| ||||| | |||| || || | || Sbjct 179581 GTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTG 179640 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || | |||| || || ||||| ||||| |||||||| || || ||| | | Sbjct 179641 TTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCC-TGAATCT 179699 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | ||| | || || | | |||||||||||| ||||| | |||| ||||| || | Sbjct 179700 TGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCG 179759 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||| || || |||||||| ||||| Sbjct 179760 TCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061091824800