Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 221 2e-52 >seq9 Length=285593 Score = 221 bits (244), Expect = 2e-52 Identities = 607/919 (66%), Gaps = 12/919 (1%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || || || || |||| ||||| || | | ||| | | ||||||||||||| Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || || || | | ||| || || ||||||| || || || ||| |||| ||||| ||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GAC 79799 || |||| | ||| || || ||||||||||| || |||| || ||| || ||| || Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 79800 GACTCGAGCCTT--TATTATAGACTT--GTATCTCTTTTCTCTTTCGTATTGTGTATATA 79855 || | | ||||| | | | ||| | | || ||||| | | || |||| | Sbjct 71019 GA-TTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATAC--TTTATGTACA-G 70964 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 || ||| ||||| | ||| || ||| | |||||||||| || ||||||||| | Sbjct 70963 CTC-TTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATTA 70905 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | ||| | |||||| | ||||| || ||| || || || | ||||| ||||||| Sbjct 70904 AACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCTA 70845 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 ||||| ||||| | ||| || || || || || ||||| || || | || Sbjct 70844 GAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAGT 70785 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | | ||||| |||||| || |||||||| || || | ||| |||||| | Sbjct 70784 CGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTGCGTTTGCCAC 70725 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 |||| || |||| || | ||| || ||| ||||||| | ||||||||| || || | Sbjct 70724 CTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCGT 70665 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 80215 | | | | |||||||| || | || || |||| | || | | ||| || || | Sbjct 70664 TCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCAA 70605 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 | || || || ||||| ||| ||| | ||||||| |||||| || ||| | || | Sbjct 70604 GCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATAC 70545 Query 80276 CCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 80335 | | || ||||| || ||| | || || |||||| ||||| || | | | Sbjct 70544 CTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTGCCG 70485 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 | || ||||| || |||||||| | ||| || ||||| | |||| | || ||| | || Sbjct 70484 TCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTAGCTCGT 70425 Query 80396 ACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACA 80455 | |||| || | ||| | |||| ||| || || || || | || |||| Sbjct 70424 AACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCAAGAACA 70365 Query 80456 TGTGCTGAGGTCTTTCAACGATCTTGTTA-TTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || || |||||||| || | | || | || ||| | || ||||| | |||| || Sbjct 70364 TATGTTGGGGTCTTTCTAC-AACACGTGAGTTGATTCTTAATAAGTATCCTCTTTCTAAT 70306 Query 80515 GTTTTAAAACCAAAATAGT 80533 || || || ||||||||| Sbjct 70305 GTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264589149160