Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 215 7e-51 >seq9 Length=285593 Score = 215 bits (238), Expect = 7e-51 Identities = 614/930 (66%), Gaps = 14/930 (2%) Strand=Plus/Minus Query 71694 CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAA 71752 ||||| |||| || || || || || || |||| ||||| || ||| ||| | | | Sbjct 71209 CAAGGACAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTA 71151 Query 71753 TTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 71812 |||||||||| ||||| || | | || || || ||||||| || || || ||| ||| Sbjct 71150 TTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGT 71091 Query 71813 TACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 71872 | ||||| ||||| |||| | || || || ||||||||||| || |||| || ||| | Sbjct 71090 TGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGG 71031 Query 71873 CTTTCCA-GACGACTCGAGCCTTTATTATATTCTTGTATC--TCTT--TTCTCTTTCGTA 71927 | ||| |||| | | ||||| || || || | ||| ||||| | | Sbjct 71030 CGAACCATAACGA-TTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATAC--T 70974 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 || |||| | || ||| ||||| | ||| ||| |||| | |||||||||| | Sbjct 70973 TTATGTACA-GCTC-TTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTG 70916 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 |||||||| || ||| | |||||| | ||||| || ||| || || || | || Sbjct 70915 AGGACACATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATAT 70856 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 ||| ||||||| ||||| ||||| | ||| || || || || || ||||| || Sbjct 70855 CCATAGAGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAG 70796 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || | || | | | ||||| |||||| || |||||||| || || | ||| Sbjct 70795 TTCAATAAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTT 70736 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 |||||| ||||| || |||| || | ||| || ||| ||||||| | |||||| Sbjct 70735 GCGTTTGCCACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGG 70676 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 ||| || || || | | |||||||| || | || || |||| | || | | || Sbjct 70675 AATGATTCCGTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTT 70616 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 || || || || || || ||||| ||| ||| | ||||||| |||||| || Sbjct 70615 ATGAACTGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGT 70556 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407 ||| | || || | |||||||| || ||| | || || |||||| ||||| || Sbjct 70555 CTCAAATATACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTG 70496 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 | | || || ||||| || |||||||| | ||| || ||||| | |||| | Sbjct 70495 AGGTCTTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGT 70436 Query 72468 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGAC 72527 || ||| | ||| |||| || | ||| | |||| ||| || || || || Sbjct 70435 CATTAGCTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTAC 70376 Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA-TTTATTTTCAACAAGTAGG 72586 | || |||||||| || |||||||| || | | || | || ||| | || ||||| Sbjct 70375 CCTCAAGAACATATGTTGGGGTCTTTCTAC-AACACGTGAGTTGATTCTTAATAAGTATC 70317 Query 72587 ATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 | |||| || || || || ||||||||| Sbjct 70316 CTCTTTCTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135265446440