Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19 163 7e-35 seq1 125 2e-23 >seq19 Length=197207 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | || || || || || ||| ||||||||| |||||||| || Sbjct 102245 ATTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCC 102304 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || ||||| || || | ||| || ||||||||||| || | ||| ||||||||| Sbjct 102305 GATAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGA 102364 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| || || || | || || | ||| ||||||| Sbjct 102365 GGGATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCC 102424 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| | || || ||||| |||||||| Sbjct 102425 ACCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | || || || || | ||| ||| |||||||| || || || Sbjct 102017 ATTCCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCG 102076 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| || || || ||||| || || ||||| || | ||||||||||||| Sbjct 102077 GACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGA 102136 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| || || ||| || | || || | || || Sbjct 102137 GGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCC 102196 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||||||||| | || || ||||| ||||||||| Sbjct 102197 ACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 >seq1 Length=711979 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || || || | ||||| || ||||| || || || || || Sbjct 179558 CCGCCTCTGAGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAA 179617 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || || || | |||||| || || || || | | ||||||||| ||||| Sbjct 179618 AGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGA 179677 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| |||||||||||||| || || || | || | | ||| | || || ||| Sbjct 179678 ATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACC 179737 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | |||||||| || || || || || ||||||||||| Sbjct 179738 TCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391481175052