Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 217 2e-51 >seq9 Length=285593 Score = 217 bits (240), Expect = 2e-51 Identities = 620/941 (66%), Gaps = 14/941 (1%) Strand=Plus/Minus Query 62877 ACAAACATGTTCAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 |||||| | ||||| |||| || || || || || || |||| ||||| || | | Sbjct 71220 ACAAACTTTGGCAAGGACAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGT 71162 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||| | | ||| |||||||| ||||| || | | ||||| || ||||||| || || Sbjct 71161 ATACTCCACTATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTT 71102 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 || ||| |||| ||||| ||||| |||| | |||||| || ||||||||||| || || Sbjct 71101 GCTTTTTCTGTTGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGA 71042 Query 63056 TTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGATTTG---TATCTCCTTT 63111 || || ||| || ||| |||| | | |||| | || |||| || | | || Sbjct 71041 TTGTAGAATGGCGAACCATAACGA-TTGTGCCT---TGATCTGTTTGACATAACGACCTT 70986 Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171 | || || | | |||| ||| ||||| | ||| || |||| | ||||| Sbjct 70985 GATTCTCATACTTTATGTACAGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAG 70926 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 ||||| | |||||||| || ||| | || ||| | |||| || ||| || | Sbjct 70925 GACATAAGTGAGGACACATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATA 70866 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 | || | ||||| ||||||| ||||| ||||| | ||| ||||| || || || | Sbjct 70865 GGTCGGATATCCATAGAGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGT 70806 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC-C 63350 |||| || || | || | | | ||||| |||||| || |||||||| || || Sbjct 70805 TCTTCCGGAGTTCAATAAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGA 70746 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 || | || | |||||| ||||| || |||| || | ||| || ||| ||||| Sbjct 70745 ATGAGCCCTTG-CGTTTGCCACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACT 70687 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 || | ||||||||| || ||||| | | | |||||||| || | || || |||| | Sbjct 70686 CTGAGCATTGGAATGATTCCGTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTA 70627 Query 63471 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 || | | ||| || || || || || || ||||| ||| ||| | ||||||| Sbjct 70626 GCCCTGACTTTATGAACTGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCAT 70567 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 |||||| || ||| | ||||| | || ||||| || ||| | || || |||||| Sbjct 70566 GATTTTAATGTCTCAAATATACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAG 70507 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| || | | || || ||||| || |||||||| | ||| || ||||| Sbjct 70506 GAGGACATCTGAGGTCTTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAG 70447 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | |||| | | ||| | ||| |||| || | || | |||| ||| || Sbjct 70446 AACTTTTGTGTCATTAGCTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATA 70387 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTT 63769 || || || | || ||||| || || |||||||| || | | || ||| ||| | Sbjct 70386 CCACAAGCTACCCTCAAGAACATATGTTGGGGTCTTTCTACAACACGTG-AGTTGATTCT 70328 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 || ||||| | |||| || || || || ||||||||| Sbjct 70327 TAATAAGTATCCTCTTTCTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943547972040