Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq19 89.7 5e-13 seq23 87.8 2e-12 seq9 86.0 6e-12 >seq1 Length=711979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 131032 TGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGC 131091 || ||||| |||||||| || ||||||||||| | ||||| || || | || Sbjct 179582 TGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGT 179641 Query 131092 TTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTC 131151 ||||| ||| | || || ||||| || |||||||| || ||||| || || ||| | | Sbjct 179642 TTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATC-CTGAATCTT 179700 Query 131152 TGCTTGAGCTG-CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 || | | | | ||| | || ||||||| ||| | || | || | ||| ||||| || Sbjct 179701 GGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGT 179760 Query 131211 TAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || ||||| ||||||||| Sbjct 179761 CAGAGTCTTGACGAATATCTGCATG 179785 >seq19 Length=197207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| ||||| | || | || ||||| ||||||||||||||| | Sbjct 102020 CCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGAC 102079 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || ||||| ||||| ||| | || | |||||| || || |||||| Sbjct 102080 AACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGG 102139 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC-TCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || | | | | || | || || |||| ||| | Sbjct 102140 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCAC 102198 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| |||| || || || || |||||||| Sbjct 102199 TTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 >seq23 Length=179919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/199 (72%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 46108 GACTGGGCGATGAAGTGGATCAA-CAGCAGCACCGCGACTTTCGCCGAGCGTATGGT-GG 46165 || ||||| | |||||||| || || || || ||||| ||||| || | | || Sbjct 161717 GAGTGGGCAGTCAAGTGGATGAATCACAAGAAC----ACTTTTGCCGAACGACTACTAGG 161662 Query 46166 CCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCA 46225 |||||| || || ||| |||| ||||||||| |||| ||||||||| | ||| Sbjct 161661 ATTTTGCGCA-GTCGAAGGCATCTTATTTTCTGGCTCTTTTTGCGCCATCTTCTGGTTCA 161603 Query 46226 A-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAG 46284 | || | || | || |||||||||| || || |||||||| || || || | |||||| Sbjct 161602 AGAAACGTGGAC-TCTTGCCCGGCCTCACCTTCAGCAACGAACTCATTTCAAGGGACGAG 161544 Query 46285 GGCCTGCATACGGACTTTG 46303 ||||| || || ||||||| Sbjct 161543 GGCCTCCACACCGACTTTG 161525 >seq9 Length=285593 Score = 86.0 bits (94), Expect = 6e-12 Identities = 216/322 (67%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 145437 AAGCA-TCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATC 145495 ||||| ||||| | || || || || | ||| ||||| | || ||||||| | || Sbjct 71394 AAGCAATCGGCCAAACCTTGAATACCGATGCCAATGGGTCTGTGGCGCATGTTGGACTTC 71335 Query 145496 CTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACT 145555 |||| | ||| | ||| || |||| | ||| || | || |||||||||| | ||| Sbjct 71334 CTCGTGGCCTCAACAGGGTAATGATTTCTGTCAATCACCTTGTTCAAGTTTCTCGTAACT 71275 Query 145556 ACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCG-TCAACGACCACACA 145614 || | || | | | || ||||| |||||||| || | | |||| | ||| | Sbjct 71274 ACATGGGTGACACGTCTCAGTTTTTCGTAGTCAAAC-GATCGGCTATCAAGATCGACAAA 71216 Query 145615 GCTATTG-ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATT 145673 || | | | || | ||| || | || || || || |||| || | || | || | Sbjct 71215 -CTTTGGCAAGGACAACGAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACT 71157 Query 145674 GTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTT 145733 || || || | ||| | |||||| ||| || || |||| ||||| ||| || |||| Sbjct 71156 CCACTATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTT 71097 Query 145734 TCCTGTTGCACGCGTCCTTGTA 145755 | |||||||||||||||||||| Sbjct 71096 TTCTGTTGCACGCGTCCTTGTA 71075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010032824960