Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9 212 8e-50 >seq9 Length=285593 Score = 212 bits (234), Expect = 8e-50 Identities = 608/925 (66%), Gaps = 15/925 (2%) Strand=Plus/Minus Query 62748 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62807 |||| || || || || || || |||| ||||| || | | ||| | | ||| |||| Sbjct 71203 CAAC-GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAG 71145 Query 62808 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 62867 |||| ||||| || | | || || || ||||||| || || || ||| |||| |||| Sbjct 71144 TGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACG 71085 Query 62868 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 62927 | ||||| |||| | |||||| || ||||||||||| || |||| || ||| || || Sbjct 71084 CGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACC 71025 Query 62928 AGA-CGACTCGAGCCTTTAT----TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT 62982 | | ||| | | ||||| || | | || | || ||||| | | | | | Sbjct 71024 ATAACGATT-GTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATACTT----TAT 70970 Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 |||| ||| ||||| | ||| || |||| |||||||||||| | ||||| Sbjct 70969 GTACAGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACA 70910 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| || ||| | || ||| | |||| || ||| || || || | ||||| || Sbjct 70909 CATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAG 70850 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||||| ||||| ||||| | ||| ||||| || || || ||||| || || | Sbjct 70849 AGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAAT 70790 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTT 63221 || | | | ||||| |||||| || |||||||| || || || | || | |||| Sbjct 70789 AAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTT 70731 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 || ||||| || |||| || | ||| || ||| ||||||| | ||||||||| | Sbjct 70730 TGCCACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGA 70671 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 | || || | | | |||||||| || | || || |||| | || | | ||| || Sbjct 70670 TTCCGTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAA 70611 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 || || || || || ||||| ||| ||| | ||||||| |||||| || ||| Sbjct 70610 CTGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAA 70551 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 | || || | |||||||| || ||| | || || |||||| ||||| || | | Sbjct 70550 ATATACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTC 70491 Query 63462 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTA 63521 || || ||||| || |||||||| | ||| |||||||| | |||| | | || Sbjct 70490 TTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTA 70431 Query 63522 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 | | ||| |||| || | || | |||| ||| || || || || | || Sbjct 70430 GCTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCA 70371 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGA-TCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63640 ||||| || || |||||||| || | | || ||| ||| | || ||||| | || Sbjct 70370 AGAACATATGTTGGGGTCTTTCTACAACACGTG-AGTTGATTCTTAATAAGTATCCTCTT 70312 Query 63641 TCCAAAGTTTTAAAACCAAAATAGT 63665 || || || || || ||||||||| Sbjct 70311 TCTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628285332400