Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq1 98.7 8e-16 >seq19 Length=197207 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || ||||| ||||| ||| | || || |||||||| |||| Sbjct 102246 ATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCACG 102187 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | | || || ||||| |||||||| || || || || |||||| Sbjct 102186 GACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAA 102127 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||| | || || | || | |||||||||||| Sbjct 102126 CAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAAC 102067 Query 22399 ATTCAAAAAGAA 22410 ||||| || ||| Sbjct 102066 ATTCAGAAGGAA 102055 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || || ||| | ||||| ||||| ||| | || Sbjct 102018 ATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAACG 101959 Query 22279 GATACCGTGGACGATATC---AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 || | || ||||| | || || ||||||||||| || |||||||| || || Sbjct 101958 GACTCTGT---CGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGAC 101902 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || || || || || || | || || || || | |||||||| Sbjct 101901 CAACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTAC 101842 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||| ||| || ||| | || ||| || || | |||||| Sbjct 101841 AACATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGAGGT 101791 >seq1 Length=711979 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || ||||| || | || || || || || ||||| Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 22279 GA---TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 || || || | || || | || ||||| || ||||| || ||||| || ||| Sbjct 179724 GACTCTATCGAGACCGTTA---AGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGAT 179668 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || | ||||| ||||||||||| || || ||| |||||| | || |||||| Sbjct 179667 CAACAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTAC 179608 Query 22396 AACATTCAAAAAGAATCCACCATACA 22421 ||||| || || || || ||||| || Sbjct 179607 AACATCCAGAAGGAGTCTACCATCCA 179582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725600860985