Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 152 9e-32 seq19 134 3e-26 >seq1 Length=711979 Score = 152 bits (168), Expect = 9e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || ||||| || |||||||| ||||| || || || | ||||| || || || || ||| Sbjct 179588 GTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCG 179647 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 |||||||| | | ||||| || || |||||||||||||| || |||||||| ||||| Sbjct 179648 GCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTA 179707 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 |||| |||||| | ||| | | || || |||| || | ||| || ||||| || ||| Sbjct 179708 ACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTC 179767 Query 68445 TTGACGAATATCTGCAT 68461 ||||||||||||||||| Sbjct 179768 TTGACGAATATCTGCAT 179784 >seq19 Length=197207 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 ||||| |||||||| ||||||| | ||||| || || || | ||||| || ||||| Sbjct 101828 TCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAA 101887 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | |||||||| || ||||| ||||| |||||||||||||| ||||| |||| Sbjct 101888 ATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTA 101947 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||| | ||| | || ||| ||||| | || || || || || || | ||| |||||| Sbjct 101948 TCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACG 102007 Query 68451 AATATCTGCATT 68462 || || |||||| Sbjct 102008 AAGATTTGCATT 102019 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||| || || || ||||| |||||||| | || || || || || | ||| Sbjct 102043 GTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTG 102102 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || ||||| || || | ||||| || || || |||||||||||||| |||||||| Sbjct 102103 TTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTT 102162 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || | || || ||||| | | || ||||||| ||| || || || || || Sbjct 102163 GGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGT 102222 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 | |||||||| || ||||||||| Sbjct 102223 TAACGTCTTGACAAAGATCTGCATT 102247 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | | |||| || | ||| | ||| ||||| ||||| |||||||| | Sbjct 102246 TTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCG 102305 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | ||||| || || || || ||||| || || || || || | || || || || | Sbjct 102306 ATAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAG 102365 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||| |||||||| ||||| || | || | | || | | ||| | Sbjct 102366 GGATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCA 102425 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| || || || || || || | ||||| || || |||||||| Sbjct 102426 CCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616996988680