Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 seq1 113 4e-20 >seq19 Length=197207 Score = 134 bits (148), Expect = 1e-26 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 |||||||| || | ||| || || |||||| || ||||||||||| ||| || || || Sbjct 101801 AGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAAT-GTCCG 101859 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 | || || ||||| ||||||||| | || ||||||||||||||||| ||||| ||||| Sbjct 101860 ACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTC 101919 Query 114284 TTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGG 114342 |||||| |||| || | ||| | || || || | ||| || | |||||| || | | Sbjct 101920 TTTGTCTTGAATC-TTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAG 101978 Query 114343 TCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| ||||| |||| ||||| || || || ||||| Sbjct 101979 TAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 ||| || ||||||||||||||| || || | | || || || ||||| || ||| | Sbjct 102055 TTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAA 102114 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 || ||||||||||| || ||||| |||||||| ||||| |||||| || | Sbjct 102115 AATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAAC 102174 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 |||| ||||| |||| || || |||| ||| | ||| || || || | || || || Sbjct 102175 GTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGAC 102234 Query 114371 AAAAATCTGCAT 114382 ||| |||||||| Sbjct 102235 AAAGATCTGCAT 102246 >seq1 Length=711979 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| | ||||| | || | || || ||||| || || || ||||||||||| Sbjct 179557 ACCGCCTCTGAGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGA 179616 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||| || | |||||| || ||| | || | |||||||| |||||||| Sbjct 179617 AAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGG 179676 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGA 114333 ||||||||| || || |||| || | ||| | || || | | |||||||| || | Sbjct 179677 AATGCCTTCCTTATCCTGAATC-TTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAA 179735 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 | |||| |||| || || || |||||||| || || || |||||||||| Sbjct 179736 CCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCATGG 179786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131998538028