Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 107 4e-18 >seq23 Length=179919 Score = 107 bits (118), Expect = 4e-18 Identities = 364/555 (66%), Gaps = 39/555 (7%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGAC----GATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 |||||||| ||||| ||| || ||| || ||| ||||||||| ||||| | Sbjct 161762 CTGTTCAACGCCATCCAGAGCGTGGAGGCCGTG----AAGCGGAAGGCGGAGTGGGCAGT 161707 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||| ||||| || || | | || || | ||| | || ||| ||| ||| || Sbjct 161706 CAAGTGGAT---GAATCACAAGAACACTTTTGCCGAACGACTACTAGGATTTTGCGCAGT 161650 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG-- 42782 ||| |||||||| || || ||| | || | ||||||||||| ||||| | | ||| Sbjct 161649 CGAAGGCATCTTATTTTCTGGCTCTTTTTGCGCCATCTTCTGGTTCAAGAA--ACGTGGA 161592 Query 42783 -TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||| ||||||||| ||||||||||| ||||||||||| || || | Sbjct 161591 CTCT-TGCCCGGCCTCACCTTCAGCAACGAACTCATTTCAAGGGACGAGGGCCTCCACAC 161533 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||| |||||| | | | ||| || |||| | | ||| ||| | Sbjct 161532 CGACTTTGGGGCCCTCCTATAC---ACCCAACT-AGGCCC---GCAACGACTCAGCCAAT 161480 Query 42902 -CCGGGC------CATCATC-ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 ||| || ||||||| ||| || || | || |||| || | ||| | || Sbjct 161479 CCCGCGCACACAACATCATCGACGAAGCCCTTCAAG-TCGAAAAATACTTCATTCTACAA 161421 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | |||||||| ||| |||| |||||| || |||||| | | ||| | | ||| Sbjct 161420 GCACTGCCCGTCGACCTCATCGGAATGAACGGCGTACTCATGGCCCAATACCTAGAATAC 161361 Query 43014 GTCGCCGA---CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGC 43070 || || || | ||||| || | ||||| | | || |||||||| | | Sbjct 161360 GTGGCAGATCGACTTCTCCAATGTC---TGGGTTACGGAAAACTATACAACACTACCAAC 161304 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 |||||||||| ||||||| ||||| | | || || |||||||| ||||| || | Sbjct 161303 CCCTTCGACTGGATGGAGATGATCTCAGTTCAAGGAAAAACCAACTTCTTCGAAAAAAGA 161244 Query 43131 GTCGCCGACTACCAG 43145 || | ||||||||| Sbjct 161243 GTTGGAGACTACCAG 161229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333663811440