Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19 145 2e-29 seq1 134 3e-26 >seq19 Length=197207 Score = 145 bits (160), Expect = 2e-29 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||||||||||| ||||||||||| ||||| || || ||||| | || || Sbjct 101801 AGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGA 101860 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || || || | ||| || || ||||| |||||||||||||| || ||| || ||| Sbjct 101861 CCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTG---GTCCGGGGGAATACCT 101917 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| || || || || || || ||| | || | ||| || | | ||| |||||||| Sbjct 101918 TCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGA 101977 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| || |||| || |||||||| || |||||| Sbjct 101978 GTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || | ||| |||||||| ||||||||||| || | | ||| | || || Sbjct 102263 AGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCCTCC 102322 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || || || ||||||||||| ||| | ||||| ||||| || || Sbjct 102323 TCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCA 102382 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || || ||||| | || | |||||| | | ||| || || || || |||||| Sbjct 102383 TGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATCGTC 102442 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || | |||||| || || |||||||| Sbjct 102443 TTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 |||||||| || || || || || |||| | ||| | || || || | ||||| || Sbjct 102050 GTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCC 102109 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| ||||||||||||||| | ||||| ||||| || ||||| || || || || Sbjct 102110 GCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTA 102169 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || | | || ||||| || || |||||||| || || | ||| Sbjct 102170 ACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTC 102229 Query 288457 TTGACGAATATCTGCATT 288474 ||||| || ||||||||| Sbjct 102230 TTGACAAAGATCTGCATT 102247 >seq1 Length=711979 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || || || || || || || ||||| || || || | Sbjct 179558 CCGCCTCTGAGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAA 179617 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || |||||||| || ||||| |||| ||||||||| || Sbjct 179618 AGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGA 179677 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| |||||||| || || || || ||| | || ||||| ||| | | || || Sbjct 179678 ATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACC 179737 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || |||||||||||||||||||||||||| Sbjct 179738 TCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647311382982