Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq1 84.2 2e-11 >seq19 Length=197207 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || ||||| || ||||| | || ||| || ||||| || |||||| Sbjct 101792 CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCT 101851 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || |||| ||| || || ||| | |||| || || |||||||| ||| Sbjct 101852 AATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGA 101911 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||||||| || || | | || || | ||| | | |||||| Sbjct 101912 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACT 101971 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| ||| ||||| || | ||||| || || |||||||| Sbjct 101972 TCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-C 45169 |||||||| | | | || ||| || |||| ||| ||| || ||||||||||||| | Sbjct 102245 ATTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCC 102304 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 | | || || || || |||||||| || || || | |||| || ||||| || || Sbjct 102305 GATAAC-GTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGG 102363 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || |||||||| || || ||||| || || | || || || | || | || || Sbjct 102364 AGGGATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTC 102423 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| ||| || || |||| ||| || ||||| || |||||| Sbjct 102424 CACCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCATC 102475 >seq1 Length=711979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| || ||| ||||||| || || || ||||| ||||||||||| || Sbjct 179629 ATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTT 179688 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| ||||| || || | | || | | ||||| | ||| || || || || | Sbjct 179689 ATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAA 179748 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || || || || ||||| Sbjct 179749 GGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000550131240