Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 131 4e-25 seq19 93.3 1e-13 >seq1 Length=711979 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||||||||||| || |||||||| |||| |||||| || | | ||| | Sbjct 179567 AGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGG 179626 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| || || |||||||| || | ||||| || |||||| ||| ||||| Sbjct 179627 CCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCC 179686 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| |||| |||| | ||| || | || || |||| ||| Sbjct 179687 TTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTC 179746 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||||| ||||| || || || || || Sbjct 179747 AAGGTCTTACCCGTCAGAGTCTTGACGAATATCTG 179781 >seq19 Length=197207 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || ||||| || | |||||| || | ||| || || || || Sbjct 102035 AGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCA 102094 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || ||||| || |||||||| || || ||| || ||||| ||| Sbjct 102095 TCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCC 102154 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||||| || | || || |||| || |||||| Sbjct 102155 TGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTC 102214 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || || ||||| || || Sbjct 102215 TTACCAGTTAACGTCTTGACAAAGATCTG 102243 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| | || || || |||| || || || | || ||||| || || Sbjct 102262 CAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCCTC 102321 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||| ||||| || || || || ||||||||||| || ||| || ||||| || Sbjct 102322 CTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTC 102381 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||| |||||| | || || | || || | ||| || |||| || ||||| Sbjct 102382 ATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATCGT 102441 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | ||| || ||||| || || Sbjct 102442 CTTCCCAGTTAAAGTCTTAACAAAGATCTG 102471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914515786423